Gm5590 Pseudogene Detail

Summary

• Symbol
  Gm5590
• Name
  predicted gene 5590

• Feature Type
  pseudogene
• IDs
  MGI:3645451
  NCBI Gene: 434168
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:39095254-39095598 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 25.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645451	pseudogene	Chr7:39094413-39095607 (-)
129S1/SvImJ	ENSMUSG00200027033	pseudogene	Chr7:26907366-26910961 (-)
A/J	ENSMUSG00195049482	pseudogene	Chr7:30602656-30606106 (-)
AKR/J	ENSMUSG00220029349	pseudogene	Chr7:17779153-17782607 (-)
BALB/cJ	ENSMUSG00180021903	pseudogene	Chr7:28193083-28196535 (-)
C3H/HeJ	ENSMUSG00175041368	pseudogene	Chr7:28399921-28403516 (-)
C57BL/6NJ	ENSMUSG00215023724	pseudogene	Chr7:27359908-27363299 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036905	pseudogene	Chr7:38719553-38722877 (-)
CAST/EiJ	ENSTCUG00005049285	pseudogene	Chr7:30324145-30327743 (-)
CBA/J	ENSMUSG00210027130	pseudogene	Chr7:28419051-28422646 (-)
DBA/2J	ENSMUSG00185051008	pseudogene	Chr7:31750777-31754167 (-)
FVB/NJ	ENSMUSG00205023082	pseudogene	Chr7:28550247-28553697 (-)
JF1/MsJ	ENSUMUG00000038290	pseudogene	Chr7:36223889-36227279 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190009020	pseudogene	Chr7:28487954-28491404 (-)
NZO/HlLtJ	ENSMUSG00225009833	pseudogene	Chr7:35786379-35789769 (-)
PWK/PhJ	ENSLUMG00010023216	pseudogene	Chr7:27256886-27260270 (-)
SPRET/EiJ	ENSMSPG00010006136	pseudogene	Chr7:27209904-27213356 (-)
WSB/EiJ	ENSIUOG00005008984	pseudogene	Chr7:28121568-28124960 (-)

Homology

• Gene Tree
  Gm5590
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000046372 (Evidence)
• NCBI Gene
  434168

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000046372	Ensembl Gene Model | MGI Sequence Detail	345	C57BL/6J
transcript	ENSMUST00000059110	Ensembl | MGI Sequence Detail	345	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 8
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm5590:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72102	Chr7:39096647-39096649 (-)	-1,050 bp