Gm5777 Pseudogene Detail

Summary

• Symbol
  Gm5777
• Name
  predicted gene 5777

• Feature Type
  pseudogene
• IDs
  MGI:3645433
  NCBI Gene: 544698
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:57658450-57658897 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 29.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645433	pseudogene	Chr10:57658382-57659099 (+)
129S1/SvImJ	ENSMUSG00200029522	pseudogene	Chr10:54571840-54572287 (+)
A/J	ENSMUSG00195028165	pseudogene	Chr10:54825737-54826184 (+)
AKR/J	ENSMUSG00220041838	pseudogene	Chr10:54556035-54556482 (+)
BALB/cJ	ENSMUSG00180027622	pseudogene	Chr10:54955114-54955561 (+)
C3H/HeJ	ENSMUSG00175026807	pseudogene	Chr10:54780223-54780670 (+)
C57BL/6NJ	ENSMUSG00215031203	pseudogene	Chr10:54478123-54478570 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009427	pseudogene	Chr10:52330764-52331211 (+)
CAST/EiJ	ENSTCUG00005029842	pseudogene	Chr10:54601835-54602282 (+)
CBA/J	ENSMUSG00210038605	pseudogene	Chr10:54592802-54593249 (+)
DBA/2J	ENSMUSG00185043217	pseudogene	Chr10:54755383-54755830 (+)
FVB/NJ	ENSMUSG00205038356	pseudogene	Chr10:54650475-54650922 (+)
JF1/MsJ	ENSUMUG00000023181	pseudogene	Chr10:54347797-54348244 (+)
LP/J	ENSMUSG00230024217	pseudogene	Chr10:56556512-56556959 (+)
NOD/ShiLtJ	ENSMUSG00190039565	pseudogene	Chr10:54938907-54939354 (+)
NZO/HlLtJ	ENSMUSG00225022821	pseudogene	Chr10:60842642-60843089 (+)
PWK/PhJ	ENSLUMG00010024475	pseudogene	Chr10:54553171-54553618 (+)
SPRET/EiJ	ENSMSPG00010027558	pseudogene	Chr10:56192534-56192981 (+)
WSB/EiJ	ENSIUOG00005041455	pseudogene	Chr10:54590286-54590733 (+)

Homology

• Gene Tree
  Gm5777
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5777
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000093552 (Evidence)
• NCBI Gene
  544698

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093552	Ensembl Gene Model | MGI Sequence Detail	448	C57BL/6J
transcript	ENSMUST00000177265	Ensembl | MGI Sequence Detail	448	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm5777:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93399	Chr10:57658377-57658390 (+)	-66 bp