Gm8540 Pseudogene Detail

Summary

• Symbol
  Gm8540
• Name
  predicted gene 8540

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3645422
  NCBI Gene: 118567833
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:21916333-21919943 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 9.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  332 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645422	pseudogene	Chr10:21916333-21924411 (-)
129S1/SvImJ	ENSMUSG00200010961	pseudogene	Chr10:18906025-18911681 (-)
A/J	ENSMUSG00195007184	pseudogene	Chr10:18918211-18923867 (-)
AKR/J	ENSMUSG00220010223	pseudogene	Chr10:18822647-18830458 (-)
BALB/cJ	ENSMUSG00180015404	pseudogene	Chr10:19042433-19048089 (-)
C3H/HeJ	ENSMUSG00175020485	pseudogene	Chr10:19065027-19072838 (-)
C57BL/6NJ	ENSMUSG00215003969	pseudogene	Chr10:18872183-18879994 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030725	pseudogene	Chr10:18815914-18823725 (-)
CBA/J	ENSMUSG00210015766	pseudogene	Chr10:19002112-19009923 (-)
DBA/2J	ENSMUSG00185007428	pseudogene	Chr10:18987130-18994941 (-)
FVB/NJ	ENSMUSG00205020253	pseudogene	Chr10:18899329-18904985 (-)
JF1/MsJ	ENSUMUG00000013404	pseudogene	Chr10:19038446-19044091 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190011234	pseudogene	Chr10:18977274-18982930 (-)
NZO/HlLtJ	ENSMUSG00225030585	pseudogene	Chr10:25127222-25135033 (-)
PWK/PhJ	ENSLUMG00010015685	pseudogene	Chr10:18820403-18826040 (-)
SPRET/EiJ	ENSMSPG00010011350	pseudogene	Chr10:19435594-19448156 (-)
WSB/EiJ	ENSIUOG00005023789	pseudogene	Chr10:18609353-18615009 (-)

Homology

• Gene Tree
  Gm8540
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm8540
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000090535 (Evidence)
• NCBI Gene
  118567833

Representative Sequences			Length	Strain/Species
genomic	118567833	NCBI Gene Model | MGI Sequence Detail	3611	C57BL/6J
transcript	XR_004936471	RefSeq | MGI Sequence Detail	637	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87