Rps15-ps3 Pseudogene Detail

Summary

• Symbol
  Rps15-ps3
• Name
  ribosomal protein S15, pseudogene 3
• Synonyms
  Gm5508

• Feature Type
  pseudogene
• IDs
  MGI:3645421
  NCBI Gene: 433193
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:64421429-64421871 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 37.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645421	pseudogene	Chr18:64421414-64421905 (+)
129S1/SvImJ	ENSMUSG00200025103	pseudogene	Chr18:61602524-61606217 (+)
A/J	ENSMUSG00195032803	pseudogene	Chr18:61654052-61657802 (+)
AKR/J	ENSMUSG00220022894	pseudogene	Chr18:61618356-61622098 (+)
BALB/cJ	ENSMUSG00180012823	pseudogene	Chr18:62221001-62224755 (+)
C3H/HeJ	ENSMUSG00175010438	pseudogene	Chr18:61825442-61829177 (+)
C57BL/6NJ	ENSMUSG00215019747	pseudogene	Chr18:61160038-61163724 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015675	pseudogene	Chr18:60820104-60823796 (+)
CBA/J	ENSMUSG00210031893	pseudogene	Chr18:61783431-61787166 (+)
DBA/2J	ENSMUSG00185029937	pseudogene	Chr18:61687472-61691157 (+)
FVB/NJ	ENSMUSG00205013609	pseudogene	Chr18:61159748-61163481 (+)
JF1/MsJ	ENSUMUG00000042324	pseudogene	Chr18:61575102-61579270 (+)
LP/J	ENSMUSG00230040377	pseudogene	Chr18:63742032-63745726 (+)
NOD/ShiLtJ	ENSMUSG00190008665	pseudogene	Chr18:61417304-61421037 (+)
NZO/HlLtJ	ENSMUSG00225030924	pseudogene	Chr18:63632290-63635973 (+)
PWK/PhJ	ENSLUMG00010027271	pseudogene	Chr18:61983547-61987464 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005006638	pseudogene	Chr18:61217950-61221697 (+)

Homology

• Gene Tree
  Rps15-ps3
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118264 (Evidence)
• NCBI Gene
  433193

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118264	Ensembl Gene Model | MGI Sequence Detail	443	C57BL/6J
transcript	ENSMUST00000235992	Ensembl | MGI Sequence Detail	443	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rps15-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151535	Chr18:64421406-64421407 (+)	-22 bp