Amd-ps6 Pseudogene Detail

Summary

• Symbol
  Amd-ps6
• Name
  S-adenosylmethionine decarboxylase, pseudogene 6
• Synonyms
  EG666251

• Feature Type
  pseudogene
• IDs
  MGI:3645413
  NCBI Gene: 666251
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:24737639-24738641 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 10.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  215 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645413	pseudogene	Chr9:24736987-24738978 (-)
129S1/SvImJ	ENSMUSG00200008545	pseudogene	Chr9:21714465-21715467 (-)
A/J	ENSMUSG00195006565	pseudogene	Chr9:21530901-21531903 (-)
AKR/J	ENSMUSG00220010984	pseudogene	Chr9:21529839-21530841 (-)
BALB/cJ	ENSMUSG00180006809	pseudogene	Chr9:21665113-21666115 (-)
C3H/HeJ	ENSMUSG00175019667	pseudogene	Chr9:21641576-21642578 (-)
C57BL/6NJ	ENSMUSG00215009446	pseudogene	Chr9:21626865-21627867 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019419	pseudogene	Chr9:21623676-21624663 (-)
CBA/J	ENSMUSG00210022203	pseudogene	Chr9:21663335-21664337 (-)
DBA/2J	ENSMUSG00185002857	pseudogene	Chr9:21723731-21724733 (-)
FVB/NJ	ENSMUSG00205004553	pseudogene	Chr9:21986854-21987856 (-)
JF1/MsJ	ENSUMUG00000015196	pseudogene	Chr9:21831916-21832905 (-)
LP/J	ENSMUSG00230005317	pseudogene	Chr9:22123574-22124576 (-)
NOD/ShiLtJ	ENSMUSG00190006244	pseudogene	Chr9:21683869-21684871 (-)
NZO/HlLtJ	ENSMUSG00225014998	pseudogene	Chr9:22113525-22114527 (-)
PWK/PhJ	ENSLUMG00010009378	pseudogene	Chr9:21719038-21720027 (-)
SPRET/EiJ	ENSMSPG00010002244	pseudogene	Chr9:22000167-22001168 (-)
WSB/EiJ	ENSIUOG00005015847	pseudogene	Chr9:21200961-21201963 (-)

Homology

• Gene Tree
  Amd-ps6
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111507 (Evidence)
• NCBI Gene
  666251

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111507	Ensembl Gene Model | MGI Sequence Detail	1003	C57BL/6J
transcript	ENSMUST00000214455	Ensembl | MGI Sequence Detail	1003	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;