Gm5948 Pseudogene Detail

Summary

• Symbol
  Gm5948
• Name
  predicted gene 5948

• Feature Type
  pseudogene
• IDs
  MGI:3645376
  NCBI Gene: 546472
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:16644688-16645517 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 6.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645376	pseudogene	Chr10:16644688-16645526 (+)
129S1/SvImJ	ENSMUSG00200010669	pseudogene	Chr10:13640846-13641684 (+)
A/J	ENSMUSG00195006834	pseudogene	Chr10:13627735-13628573 (+)
AKR/J	ENSMUSG00220010229	pseudogene	Chr10:13570083-13570921 (+)
BALB/cJ	ENSMUSG00180016026	pseudogene	Chr10:13758737-13759575 (+)
C3H/HeJ	ENSMUSG00175020955	pseudogene	Chr10:13775588-13776426 (+)
C57BL/6NJ	ENSMUSG00215003995	pseudogene	Chr10:13595519-13596357 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031832	pseudogene	Chr10:13561092-13561930 (+)
CBA/J	ENSMUSG00210015881	pseudogene	Chr10:13713764-13714602 (+)
DBA/2J	ENSMUSG00185007575	pseudogene	Chr10:13700797-13701635 (+)
FVB/NJ	ENSMUSG00205018455	pseudogene	Chr10:13623450-13624288 (+)
JF1/MsJ	ENSUMUG00000014481	pseudogene	Chr10:13785090-13785928 (+)
LP/J	ENSMUSG00230019042	pseudogene	Chr10:15357374-15358212 (+)
NOD/ShiLtJ	ENSMUSG00190011200	pseudogene	Chr10:13708733-13709571 (+)
NZO/HlLtJ	ENSMUSG00225016376	pseudogene	Chr10:19859801-19860639 (+)
PWK/PhJ	ENSLUMG00010015592	pseudogene	Chr10:13508844-13509682 (+)
SPRET/EiJ	ENSMSPG00010011518	pseudogene	Chr10:14046358-14047194 (+)
WSB/EiJ	ENSIUOG00005023033	pseudogene	Chr10:13318800-13319638 (+)

Homology

• Gene Tree
  Gm5948
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112903 (Evidence)
• NCBI Gene
  546472

Representative Sequences			Length	Strain/Species
genomic	546472	NCBI Gene Model | MGI Sequence Detail	830	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;