Gm9104 Pseudogene Detail

Summary

• Symbol
  Gm9104
• Name
  predicted gene 9104

• Feature Type
  pseudogene
• IDs
  MGI:3645365
  NCBI Gene: 668319
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:45776714-45777196 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 22.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645365	pseudogene	Chr17:45776671-45777230 (+)
129S1/SvImJ	ENSMUSG00200028137	pseudogene	Chr17:40984642-40985124 (+)
A/J	ENSMUSG00195021942	pseudogene	Chr17:42481699-42482181 (+)
AKR/J	ENSMUSG00220036507	pseudogene	Chr17:41453531-41454013 (+)
BALB/cJ	ENSMUSG00180026498	pseudogene	Chr17:42220263-42220745 (+)
C3H/HeJ	ENSMUSG00175016136	pseudogene	Chr17:41534329-41534811 (+)
C57BL/6NJ	ENSMUSG00215037552	pseudogene	Chr17:41098844-41099326 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026212	pseudogene	Chr17:42277091-42277573 (+)
CBA/J	ENSMUSG00210039260	pseudogene	Chr17:41284031-41284513 (+)
DBA/2J	ENSMUSG00185030849	pseudogene	Chr17:44200999-44201481 (+)
FVB/NJ	ENSMUSG00205052640	pseudogene	Chr17:41773875-41774357 (+)
JF1/MsJ	ENSUMUG00000040205	pseudogene	Chr17:43809366-43809848 (+)
LP/J	ENSMUSG00230041814	pseudogene	Chr17:45086583-45087065 (+)
NOD/ShiLtJ	ENSMUSG00190017674	pseudogene	Chr17:41172897-41173379 (+)
NZO/HlLtJ	ENSMUSG00225043987	pseudogene	Chr17:47344202-47344684 (+)
PWK/PhJ	ENSLUMG00010035543	pseudogene	Chr17:41045257-41045739 (+)
SPRET/EiJ	ENSMSPG00010037219	pseudogene	Chr17:41271286-41271768 (+)
WSB/EiJ	ENSIUOG00005028546	pseudogene	Chr17:42145614-42146096 (+)

Homology

• Gene Tree
  Gm9104
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Incidental Mutations
  APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1
• CCDS
  CCDS50117.1

• Ensembl
  ENSMUSG00000061242 (Evidence)
• NCBI Gene
  668319

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000061242	Ensembl Gene Model | MGI Sequence Detail	483	C57BL/6J
transcript	ENSMUST00000095268	Ensembl | MGI Sequence Detail	483	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9