Rpl27a-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl27a-ps1
• Name
  ribosomal protein L27A, pseudogene 1
• Synonyms
  Gm4923

• Feature Type
  pseudogene
• IDs
  MGI:3645354
  NCBI Gene: 237361
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:61145609-61146056 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 32.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645354	pseudogene	Chr10:61145585-61146098 (+)
129S1/SvImJ	ENSMUSG00200029733	pseudogene	Chr10:57811823-57812270 (+)
A/J	ENSMUSG00195028205	pseudogene	Chr10:58124371-58124818 (+)
AKR/J	ENSMUSG00220041297	pseudogene	Chr10:57816533-57816980 (+)
BALB/cJ	ENSMUSG00180029012	pseudogene	Chr10:58166647-58167094 (+)
C3H/HeJ	ENSMUSG00175026931	pseudogene	Chr10:58019057-58019504 (+)
C57BL/6NJ	ENSMUSG00215031334	pseudogene	Chr10:57764763-57765210 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029583	pseudogene	Chr10:57813034-57813481 (+)
CBA/J	ENSMUSG00210038124	pseudogene	Chr10:57897357-57897804 (+)
DBA/2J	ENSMUSG00185043227	pseudogene	Chr10:58244151-58244598 (+)
FVB/NJ	ENSMUSG00205038453	pseudogene	Chr10:57917768-57918215 (+)
JF1/MsJ	ENSUMUG00000022100	pseudogene	Chr10:59477827-59478274 (+)
JF1/MsJ	ENSUMUG00000002658	pseudogene	Chr3:79505891-79506337 (+)
LP/J	ENSMUSG00230023560	pseudogene	Chr10:60047245-60047692 (+)
NOD/ShiLtJ	ENSMUSG00190037458	pseudogene	Chr10:58229912-58230359 (+)
NZO/HlLtJ	ENSMUSG00225045684	pseudogene	Chr10:64328202-64328649 (+)
PWK/PhJ	ENSLUMG00010023931	pseudogene	Chr10:57839972-57840419 (+)
SPRET/EiJ	ENSMSPG00010027497	pseudogene	Chr10:59436168-59436607 (+)
WSB/EiJ	ENSIUOG00005042856	pseudogene	Chr10:57801171-57801618 (+)
WSB/EiJ	ENSIUOG00005047166	pseudogene	Chr12:76765884-76766332 (+)

Homology

• Gene Tree
  Rpl27a-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl27a-ps1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000061488 (Evidence)
• NCBI Gene
  237361

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000061488	Ensembl Gene Model | MGI Sequence Detail	448	C57BL/6J
transcript	ENSMUST00000075382	Ensembl | MGI Sequence Detail	448	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Rpl27a-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93662	Chr10:61145581-61145587 (+)	-25 bp