Gm6828 Pseudogene Detail

Summary

• Symbol
  Gm6828
• Name
  predicted gene 6828

• Feature Type
  pseudogene
• IDs
  MGI:3645353
  NCBI Gene: 628030
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:7099842-7101027 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 4.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645353	pseudogene	Chr7:7097416-7101094 (-)
129S1/SvImJ	ENSMUSG00200042851	pseudogene	Chr7:3952850-3954266 (-)
A/J	ENSMUSG00195052903	pseudogene	Chr7:3804072-3805489 (-)
AKR/J	ENSMUSG00220031192	pseudogene	Chr7:1468079-1469264 (-)
BALB/cJ	ENSMUSG00180050583	pseudogene	Chr7:3759313-3760730 (-)
C3H/HeJ	ENSMUSG00175048295	pseudogene	Chr7:3711956-3713141 (-)
C57BL/6NJ	ENSMUSG00215044098	pseudogene	Chr7:3857785-3858970 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030077	pseudogene	Chr7:3905664-3907075 (-)
CBA/J	ENSMUSG00210048019	pseudogene	Chr7:3715408-3716825 (-)
DBA/2J	ENSMUSG00185043949	pseudogene	Chr7:3972355-3973540 (-)
FVB/NJ	ENSMUSG00205049263	pseudogene	Chr7:3581560-3582970 (-)
JF1/MsJ	ENSUMUG00000055460	pseudogene	Chr7:4035945-4037130 (-)
LP/J	ENSMUSG00230041739	pseudogene	Chr7:6958363-6959779 (-)
NOD/ShiLtJ	ENSMUSG00190050259	pseudogene	Chr7:3837630-3839047 (-)
NZO/HlLtJ	ENSMUSG00225022512	pseudogene	Chr7:4801982-4803398 (-)
PWK/PhJ	ENSLUMG00010049846	pseudogene	Chr7:7516319-7517491 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005052356	pseudogene	Chr7:3723622-3725020 (-)

Homology

• Gene Tree
  Gm6828
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000109488 (Evidence)
• NCBI Gene
  628030

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109488	Ensembl Gene Model | MGI Sequence Detail	1186	C57BL/6J
transcript	ENSMUST00000207902	Ensembl | MGI Sequence Detail	1186	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;