Gm5746 Pseudogene Detail

Summary

• Symbol
  Gm5746
• Name
  predicted gene 5746

• Feature Type
  pseudogene
• IDs
  MGI:3645350
  NCBI Gene: 436082
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:77004473-77006672 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 42.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  33 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645350	pseudogene	Chr9:77004207-77006785 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014179	pseudogene	Chr9:77512540-77514741 (+)
A/J	MGP_AJ_G0014197	pseudogene	Chr9:74800552-74802753 (+)
AKR/J	MGP_AKRJ_G0014122	pseudogene	Chr9:76578806-76581489 (+)
BALB/cJ	MGP_BALBcJ_G0014147	pseudogene	Chr9:74488034-74490235 (+)
C3H/HeJ	MGP_C3HHeJ_G0013978	pseudogene	Chr9:77081580-77083781 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014591	pseudogene	Chr9:79575426-79577625 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012423	pseudogene	Chr9:74076836-74079031 (+)
CAST/EiJ	MGP_CASTEiJ_G0013635	pseudogene	Chr9:77436126-77438325 (+)
CBA/J	MGP_CBAJ_G0013960	pseudogene	Chr9:82331205-82333406 (+)
DBA/2J	MGP_DBA2J_G0014044	pseudogene	Chr9:74465618-74467819 (+)
FVB/NJ	MGP_FVBNJ_G0014043	pseudogene	Chr9:73729454-73731655 (+)
LP/J	MGP_LPJ_G0014127	pseudogene	Chr9:77744495-77746696 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014074	pseudogene	Chr9:83527522-83529723 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014564	pseudogene	Chr9:76748833-76754281 (+)
PWK/PhJ	MGP_PWKPhJ_G0013450	pseudogene	Chr9:74719646-74721962 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013235	pseudogene	Chr9:77016888-77019088 (+)
WSB/EiJ	MGP_WSBEiJ_G0013694	pseudogene	Chr9:76671242-76673441 (+)

Homology

• Gene Tree
  Gm5746
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5746
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000099138 (Evidence)
• NCBI Gene
  436082

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099138	Ensembl Gene Model | MGI Sequence Detail	2200	C57BL/6J
transcript	ENSMUST00000183550	Ensembl | MGI Sequence Detail	2200	Not Applicable

References

• Summaries
  All 11

  Phenotypes 7
• Earliest
  J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
• Latest
  J:29898 Avraham KB, et al., The mouse Snell's waltzer deafness gene encodes an unconventional myosin required for structural integrity of inner ear hair cells. Nat Genet. 1995 Dec;11(4):369-75

TSS for Gm5746:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2944	Chr9:77004334-77004364 (+)	-124 bp