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Gm5401 Pseudogene Detail
Summary
  • Symbol
    Gm5401
  • Name
    predicted pseudogene 5401
Location &
Maps
more
  • Sequence Map
    ChrX:93651825-93652302 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 41.61 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    88 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645347
 pseudogene ChrX:93651711-93652854 (-)
129S1/SvImJ ENSMUSG00200038363
 pseudogene ChrX:75424940-75425417 (-)
A/J ENSMUSG00195032112
 pseudogene ChrX:79210395-79210872 (-)
AKR/J ENSMUSG00220030581
 pseudogene ChrX:73941802-73942279 (-)
BALB/cJ ENSMUSG00180022334
 pseudogene ChrX:75849239-75849716 (-)
C3H/HeJ ENSMUSG00175019378
 pseudogene ChrX:79572467-79572944 (-)
C57BL/6NJ ENSMUSG00215023262
 pseudogene ChrX:76106537-76107014 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0012769
 pseudogene ChrX:89255814-89256291 (-)
CAST/EiJ ENSTCUG00005028699
 pseudogene ChrX:77106680-77107157 (-)
CBA/J ENSMUSG00210035835
 pseudogene ChrX:76282491-76282968 (-)
DBA/2J ENSMUSG00185033171
 pseudogene ChrX:88572176-88572653 (-)
FVB/NJ ENSMUSG00205025779
 pseudogene ChrX:75553992-75554469 (-)
JF1/MsJ ENSUMUG00000021783
 pseudogene ChrX:109408270-109408747 (-)
LP/J ENSMUSG00230014248
 pseudogene ChrX:95270307-95270784 (-)
NOD/ShiLtJ ENSMUSG00190018734
 pseudogene ChrX:75469574-75470051 (-)
NZO/HlLtJ ENSMUSG00225045789
 pseudogene ChrX:100403180-100403657 (-)
PWK/PhJ ENSLUMG00010039127
 pseudogene ChrX:74748916-74749393 (-)
SPRET/EiJ ENSMSPG00010032620
 pseudogene ChrX:78822053-78822531 (-)
WSB/EiJ ENSIUOG00005041601
 pseudogene ChrX:76128539-76129016 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082406 Ensembl Gene Model | MGI Sequence Detail 478 C57BL/6J ±  kb
transcript ENSMUST00000122444 Ensembl | MGI Sequence Detail 365 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 8
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory