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Gm5401 Pseudogene Detail
Summary
  • Symbol
    Gm5401
  • Name
    predicted pseudogene 5401
Location &
Maps
more
  • Sequence Map
    ChrX:93651825-93652302 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 41.61 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    3 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645347
 pseudogene ChrX:93651711-93652854 (-)
129S1/SvImJ MGP_129S1SvImJ_G0014624
 pseudogene ChrX:91030949-91031426 (-)
A/J MGP_AJ_G0014633
 pseudogene ChrX:91108888-91109365 (-)
AKR/J MGP_AKRJ_G0014556
 pseudogene ChrX:93521924-93522401 (-)
BALB/cJ MGP_BALBcJ_G0014581
 pseudogene ChrX:89834859-89835336 (-)
C3H/HeJ MGP_C3HHeJ_G0014418
 pseudogene ChrX:91383125-91383602 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015064
 pseudogene ChrX:93811564-93812041 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0012769
 pseudogene ChrX:89255814-89256291 (-)
CAST/EiJ MGP_CASTEiJ_G0014043
 pseudogene ChrX:76046544-76047021 (-)
CBA/J MGP_CBAJ_G0014404
 pseudogene ChrX:96504251-96504728 (-)
DBA/2J MGP_DBA2J_G0014486
 pseudogene ChrX:90339067-90339544 (-)
FVB/NJ MGP_FVBNJ_G0014473
 pseudogene ChrX:89747675-89748152 (-)
LP/J MGP_LPJ_G0014584
 pseudogene ChrX:91847608-91848085 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0014512
 pseudogene ChrX:100839733-100840210 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015031
 pseudogene ChrX:90730417-90730894 (-)
PWK/PhJ MGP_PWKPhJ_G0013850
 pseudogene ChrX:73812998-73813475 (-)
SPRET/EiJ MGP_SPRETEiJ_G0013643
 pseudogene ChrX:76908995-76909473 (-)
WSB/EiJ MGP_WSBEiJ_G0014121
 pseudogene ChrX:89536780-89537257 (-)



Homology
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Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082406 Ensembl Gene Model | MGI Sequence Detail 478 C57BL/6J ±  kb
transcript ENSMUST00000122444 Ensembl | MGI Sequence Detail 365 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 7
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory