Gm5400 Pseudogene Detail

Summary

• Symbol
  Gm5400
• Name
  predicted gene 5400

• Feature Type
  pseudogene
• IDs
  MGI:3645346
  NCBI Gene: 385495
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:93355500-93356393 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 41.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645346	pseudogene	ChrX:93355500-93356442 (+)
129S1/SvImJ	ENSMUSG00200038782	pseudogene	ChrX:75128350-75129292 (+)
A/J	ENSMUSG00195032487	pseudogene	ChrX:78917492-78918434 (+)
AKR/J	ENSMUSG00220029438	pseudogene	ChrX:73648882-73649824 (+)
BALB/cJ	ENSMUSG00180022450	pseudogene	ChrX:75556312-75557254 (+)
C3H/HeJ	ENSMUSG00175019118	pseudogene	ChrX:79279584-79280526 (+)
C57BL/6NJ	ENSMUSG00215019905	pseudogene	ChrX:75809946-75810888 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028495	pseudogene	ChrX:76814851-76815793 (+)
CBA/J	ENSMUSG00210035130	pseudogene	ChrX:75989596-75990538 (+)
DBA/2J	ENSMUSG00185032482	pseudogene	ChrX:88275590-88276532 (+)
FVB/NJ	ENSMUSG00205026766	pseudogene	ChrX:75261079-75262021 (+)
JF1/MsJ	ENSUMUG00000022449	pseudogene	ChrX:109118495-109119437 (+)
LP/J	ENSMUSG00230014222	pseudogene	ChrX:94973763-94974705 (+)
NOD/ShiLtJ	ENSMUSG00190018904	pseudogene	ChrX:75173015-75173957 (+)
NZO/HlLtJ	ENSMUSG00225045778	pseudogene	ChrX:100110297-100111239 (+)
PWK/PhJ	ENSLUMG00010039336	pseudogene	ChrX:74449424-74450366 (+)
SPRET/EiJ	ENSMSPG00010034504	pseudogene	ChrX:78515987-78516929 (+)
WSB/EiJ	ENSIUOG00005041882	pseudogene	ChrX:75836088-75837030 (+)

Homology

• Gene Tree
  Gm5400
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000080923 (Evidence)
• NCBI Gene
  385495

Representative Sequences			Length	Strain/Species
genomic	385495	NCBI Gene Model | MGI Sequence Detail	894	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;