Gm5866 Pseudogene Detail

Summary

• Symbol
  Gm5866
• Name
  predicted gene 5866

• Feature Type
  pseudogene
• IDs
  MGI:3645339
  NCBI Gene: 545750
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:52739416-52740388 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 28.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645339	pseudogene	Chr5:52739377-52740431 (+)
129S1/SvImJ	ENSMUSG00200001736	pseudogene	Chr5:48292317-48293289 (+)
A/J	ENSMUSG00195016748	pseudogene	Chr5:47651898-47652880 (+)
AKR/J	ENSMUSG00220000919	pseudogene	Chr5:47721566-47722548 (+)
BALB/cJ	ENSMUSG00180006798	pseudogene	Chr5:47421822-47422794 (+)
C3H/HeJ	ENSMUSG00175016227	pseudogene	Chr5:49441761-49442743 (+)
C57BL/6NJ	ENSMUSG00215001931	pseudogene	Chr5:48214134-48215106 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003216	pseudogene	Chr5:47573185-47574154 (+)
CBA/J	ENSMUSG00210024765	pseudogene	Chr5:48402153-48403135 (+)
DBA/2J	ENSMUSG00185001632	pseudogene	Chr5:50280621-50281603 (+)
FVB/NJ	ENSMUSG00205003077	pseudogene	Chr5:47231455-47232437 (+)
JF1/MsJ	ENSUMUG00000001234	pseudogene	Chr5:54858164-54859133 (+)
LP/J	ENSMUSG00230010878	pseudogene	Chr5:54955974-54956946 (+)
NOD/ShiLtJ	ENSMUSG00190000795	pseudogene	Chr5:47347667-47348649 (+)
NZO/HlLtJ	ENSMUSG00225028769	pseudogene	Chr5:60060299-60061281 (+)
PWK/PhJ	ENSLUMG00010001537	pseudogene	Chr5:47521218-47522193 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005019420	pseudogene	Chr5:50321447-50322429 (+)

Homology

• Gene Tree
  Gm5866
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm5866
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000095078 (Evidence)
• NCBI Gene
  545750

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095078	Ensembl Gene Model | MGI Sequence Detail	973	C57BL/6J
transcript	ENSMUST00000177881	Ensembl | MGI Sequence Detail	973	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm5866:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46179	Chr5:52738694-52738709 (+)	-714 bp