Gm16412 Pseudogene Detail

Summary

• Symbol
  Gm16412
• Name
  predicted pseudogene 16412

• Feature Type
  pseudogene
• IDs
  MGI:3645317
  NCBI Gene: 100041727
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:88048976-88049248 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 39.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645317	pseudogene	ChrX:88048976-88049409 (+)
129S1/SvImJ	ENSMUSG00200032159	pseudogene	Chr10:86212095-86212351 (+)
129S1/SvImJ	ENSMUSG00200032664	pseudogene	ChrX:70059898-70060170 (+)
A/J	ENSMUSG00195031743	pseudogene	ChrX:73780068-73780340 (+)
AKR/J	ENSMUSG00220029026	pseudogene	ChrX:68671189-68671461 (+)
BALB/cJ	ENSMUSG00180024569	pseudogene	ChrX:70330866-70331138 (+)
C3H/HeJ	ENSMUSG00175019150	pseudogene	ChrX:73960670-73960942 (+)
C3H/HeJ	ENSMUSG00175024616	pseudogene	Chr10:86547609-86547865 (+)
C57BL/6NJ	ENSMUSG00215034574	pseudogene	Chr10:86214889-86215145 (+)
C57BL/6NJ	ENSMUSG00215016226	pseudogene	ChrX:70478792-70479064 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051920	pseudogene	Chr11:95397622-95397878 (+)
CAST/EiJ	ENSTCUG00005029345	pseudogene	ChrX:71548820-71549092 (+)
CBA/J	ENSMUSG00210039117	pseudogene	Chr10:86388056-86388312 (+)
CBA/J	ENSMUSG00210036483	pseudogene	ChrX:70675470-70675742 (+)
DBA/2J	ENSMUSG00185032184	pseudogene	ChrX:83011060-83011332 (+)
FVB/NJ	ENSMUSG00205019354	pseudogene	ChrX:69978679-69978951 (+)
JF1/MsJ	ENSUMUG00000022706	pseudogene	ChrX:103812387-103812659 (+)
LP/J	ENSMUSG00230019515	pseudogene	Chr10:88494366-88494622 (+)
LP/J	ENSMUSG00230010667	pseudogene	ChrX:89665296-89665568 (+)
NOD/ShiLtJ	ENSMUSG00190025225	pseudogene	ChrX:70019492-70019764 (+)
NZO/HlLtJ	ENSMUSG00225046176	pseudogene	ChrX:94801348-94801620 (+)
PWK/PhJ	ENSLUMG00010017831	pseudogene	Chr13:3491085-3491343 (-)
PWK/PhJ	ENSLUMG00010035195	pseudogene	ChrX:69486007-69486279 (+)
PWK/PhJ	ENSLUMG00010049629	pseudogene	Chr7:131357848-131358104 (+)
SPRET/EiJ	ENSMSPG00010033518	pseudogene	ChrX:73335203-73335228 (+)
WSB/EiJ	ENSIUOG00005043172	pseudogene	ChrX:70582134-70582406 (+)

Homology

• Gene Tree
  Gm16412
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000084060 (Evidence)
• NCBI Gene
  100041727

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084060	Ensembl Gene Model | MGI Sequence Detail	273	C57BL/6J
transcript	ENSMUST00000121602	Ensembl | MGI Sequence Detail	273	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;