Gm5627 Gene Detail

Summary

• Symbol
  Gm5627
• Name
  predicted gene 5627

• Feature Type
  lncRNA gene
• IDs
  MGI:3645308
  NCBI Gene: 434510
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:102616847-102633884 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 54.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  533 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645308	lncRNA gene	Chr9:102611754-102634615 (+)
129S1/SvImJ	ENSMUSG00200016705	lncRNA gene	Chr9:99779742-99796640 (+)
A/J	ENSMUSG00195020536	lncRNA gene	Chr9:98996435-99013334 (+)
AKR/J	ENSMUSG00220041395	lncRNA gene	Chr9:99388189-99405093 (+)
BALB/cJ	ENSMUSG00180024430	lncRNA gene	Chr9:99313135-99330027 (+)
C3H/HeJ	ENSMUSG00175013755	lncRNA gene	Chr9:99655778-99672677 (+)
C57BL/6NJ	ENSMUSG00215029987	lncRNA gene	Chr9:99652839-99669879 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032582	protein coding gene	Chr9:98163450-98178787 (+)
CAST/EiJ	ENSTCUG00005013978	lncRNA gene	Chr9:99436809-99453849 (+)
CBA/J	ENSMUSG00210015455	lncRNA gene	Chr9:99508456-99525495 (+)
DBA/2J	ENSMUSG00185012401	lncRNA gene	Chr9:99663012-99679916 (+)
FVB/NJ	ENSMUSG00205030513	lncRNA gene	Chr9:99667362-99684259 (+)
JF1/MsJ	ENSUMUG00000048447	lncRNA gene	Chr9:99494471-99511370 (+)
LP/J	ENSMUSG00230020321	lncRNA gene	Chr9:99811574-99828482 (+)
NOD/ShiLtJ	ENSMUSG00190038441	lncRNA gene	Chr9:99298798-99315699 (+)
NZO/HlLtJ	ENSMUSG00225020829	lncRNA gene	Chr9:100029805-100046842 (+)
PWK/PhJ	ENSLUMG00010029533	lncRNA gene	Chr9:99418127-99435081 (+)
SPRET/EiJ	ENSMSPG00010048479	lncRNA gene	Chr9:101293998-101311229 (+)
WSB/EiJ	ENSIUOG00005025825	lncRNA gene	Chr9:98730734-98747816 (+)

Homology

• Gene Tree
  Gm5627
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000093812 (Evidence)
• NCBI Gene
  434510

Representative Sequences			Length	Strain/Species
genomic	434510	NCBI Gene Model | MGI Sequence Detail	17038	C57BL/6J
transcript	NR_033301	RefSeq | MGI Sequence Detail	931	C57BL/6
polypeptide	Q3V3D0	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;