Ap3m1-ps Pseudogene Detail

Summary

• Symbol
  Ap3m1-ps
• Name
  adaptor-related protein complex 3, mu 1 subunit, pseudogene
• Synonyms
  D10Ertd567e, EG544716

• Feature Type
  pseudogene
• IDs
  MGI:3645307
  NCBI Gene: 544716
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:82421260-82422517 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645307	pseudogene	Chr10:82421216-82423372 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215053355	pseudogene	Chr10:78907564-78908821 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034002	pseudogene	Chr14:13801322-13811613 (-)
CAST/EiJ	ENSTCUG00005051924	pseudogene	Chr10:78723189-78724446 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000056131	pseudogene	Chr10:80679475-80680731 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010052129	pseudogene	Chr10:79003046-79004302 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051285	pseudogene	Chr10:79049351-79050608 (+)

Homology

• Gene Tree
  Ap3m1-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Ap3m1-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000094683 (Evidence)
• NCBI Gene
  544716

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094683	Ensembl Gene Model | MGI Sequence Detail	1258	C57BL/6J
transcript	ENSMUST00000177652	Ensembl | MGI Sequence Detail	1258	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

Other
Accession IDs

MGI:1261914

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Ap3m1-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94818	Chr10:82421224-82421240 (+)	-28 bp