Gm6458 Pseudogene Detail

Summary

• Symbol
  Gm6458
• Name
  predicted gene 6458

• Feature Type
  pseudogene
• IDs
  MGI:3645274
  NCBI Gene: 623872
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:52332598-52333232 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 28.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645274	pseudogene	Chr8:52331481-52333806 (+)
129S1/SvImJ	ENSMUSG00200006433	pseudogene	Chr8:47464421-47465055 (+)
A/J	ENSMUSG00195004190	pseudogene	Chr8:47960466-47961100 (+)
AKR/J	ENSMUSG00220004531	pseudogene	Chr8:47747177-47747811 (+)
BALB/cJ	ENSMUSG00180003012	pseudogene	Chr8:47499449-47500083 (+)
C3H/HeJ	ENSMUSG00175005410	pseudogene	Chr8:47614303-47614937 (+)
C57BL/6NJ	ENSMUSG00215011139	pseudogene	Chr8:47424153-47424787 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020156	pseudogene	Chr8:48035018-48035652 (-)
CBA/J	ENSMUSG00210019338	pseudogene	Chr8:47471262-47471896 (+)
DBA/2J	ENSMUSG00185008777	pseudogene	Chr8:53378261-53378895 (+)
FVB/NJ	ENSMUSG00205002961	pseudogene	Chr8:46657587-46658221 (+)
JF1/MsJ	ENSUMUG00000005574	pseudogene	Chr8:54960670-54961304 (+)
LP/J	ENSMUSG00230017961	pseudogene	Chr8:57039822-57040456 (+)
NOD/ShiLtJ	ENSMUSG00190006192	pseudogene	Chr8:47532492-47533126 (+)
NZO/HlLtJ	ENSMUSG00225012177	pseudogene	Chr8:60641594-60642228 (+)
PWK/PhJ	ENSLUMG00010009683	pseudogene	Chr8:47260775-47261409 (+)
SPRET/EiJ	ENSMSPG00010006328	pseudogene	Chr8:48158243-48158876 (+)
WSB/EiJ	ENSIUOG00005002631	pseudogene	Chr8:48352119-48352753 (+)

Homology

• Gene Tree
  Gm6458
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6458
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109897 (Evidence)
• NCBI Gene
  623872

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109897	Ensembl Gene Model | MGI Sequence Detail	635	C57BL/6J
transcript	ENSMUST00000211573	Ensembl | MGI Sequence Detail	635	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;