Gm7874 Pseudogene Detail

Summary

• Symbol
  Gm7874
• Name
  predicted gene 7874

• Feature Type
  pseudogene
• IDs
  MGI:3645268
  NCBI Gene: 665977
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:27182109-27182468 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 15.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645268	pseudogene	Chr18:27179407-27182641 (+)
129S1/SvImJ	ENSMUSG00200016360	pseudogene	Chr18:24185580-24188814 (+)
A/J	ENSMUSG00195002445	pseudogene	Chr18:24345167-24348401 (+)
AKR/J	ENSMUSG00220011399	pseudogene	Chr18:24337559-24340787 (+)
BALB/cJ	ENSMUSG00180003554	pseudogene	Chr18:24785410-24788644 (+)
C3H/HeJ	ENSMUSG00175024529	pseudogene	Chr18:24319839-24323073 (+)
C57BL/6NJ	ENSMUSG00215021683	pseudogene	Chr18:24037056-24040290 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016511	pseudogene	Chr18:23983225-23986456 (+)
CBA/J	ENSMUSG00210016137	pseudogene	Chr18:24335833-24339067 (+)
DBA/2J	ENSMUSG00185023261	pseudogene	Chr18:24283956-24287190 (+)
FVB/NJ	ENSMUSG00205024466	pseudogene	Chr18:24004615-24007849 (+)
JF1/MsJ	ENSUMUG00000028365	pseudogene	Chr18:24383869-24387093 (+)
LP/J	ENSMUSG00230006236	pseudogene	Chr18:26379695-26382929 (+)
NOD/ShiLtJ	ENSMUSG00190006990	pseudogene	Chr18:24095801-24099035 (+)
NZO/HlLtJ	ENSMUSG00225025675	pseudogene	Chr18:26332431-26335659 (+)
PWK/PhJ	ENSLUMG00010003795	pseudogene	Chr18:24560250-24563470 (+)
SPRET/EiJ	ENSMSPG00010022708	pseudogene	Chr18:24482325-24485544 (+)
WSB/EiJ	ENSIUOG00005002852	pseudogene	Chr18:24108365-24111598 (+)

Homology

• Gene Tree
  Gm7874
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117346 (Evidence)
• NCBI Gene
  665977

Representative Sequences			Length	Strain/Species
genomic	665977	NCBI Gene Model | MGI Sequence Detail	360	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;