Gm5038 Pseudogene Detail

Summary

• Symbol
  Gm5038
• Name
  predicted gene 5038

• Feature Type
  pseudogene
• IDs
  MGI:3645262
  NCBI Gene: 263305
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:58121306-58123009 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 36.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645262	pseudogene	Chr11:58121306-58123012 (-)
129S1/SvImJ	ENSMUSG00200037402	pseudogene	Chr11:55120399-55121370 (-)
A/J	ENSMUSG00195041660	pseudogene	Chr11:55054430-55055401 (-)
AKR/J	ENSMUSG00220050252	pseudogene	Chr11:55216532-55217503 (-)
BALB/cJ	ENSMUSG00180050489	pseudogene	Chr11:55136545-55137516 (-)
C3H/HeJ	ENSMUSG00175049991	pseudogene	Chr11:55089708-55090679 (-)
C57BL/6NJ	ENSMUSG00215040386	pseudogene	Chr11:54911314-54912284 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047902	pseudogene	Chr11:54628760-54629730 (-)
CBA/J	ENSMUSG00210040871	pseudogene	Chr11:54941106-54942077 (-)
DBA/2J	ENSMUSG00185044459	pseudogene	Chr11:55125966-55126937 (-)
FVB/NJ	ENSMUSG00205050877	pseudogene	Chr11:54993859-54994830 (-)
JF1/MsJ	ENSUMUG00000048815	pseudogene	Chr11:55474041-55475011 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190051291	pseudogene	Chr11:55180008-55180979 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010037682	pseudogene	Chr11:54933038-54934009 (-)
SPRET/EiJ	ENSMSPG00010042493	pseudogene	Chr11:55719375-55720347 (-)
WSB/EiJ	ENSIUOG00005039230	pseudogene	Chr11:54982530-54983501 (-)

Homology

• Gene Tree
  Gm5038
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5038
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000118428 (Evidence)
• NCBI Gene
  263305

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118428	Ensembl Gene Model | MGI Sequence Detail	1704	C57BL/6J
transcript	ENSMUST00000238359	Ensembl | MGI Sequence Detail	1704	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm5038:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108149	Chr11:58122260-58122271 (-)	743 bp