Gm4961 Gene Detail

Summary

• Symbol
  Gm4961
• Name
  predicted pseudogene 4961

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3645260
  NCBI Gene: 242914
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:30297938-30302684 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645260	lncRNA gene	Chr5:30297908-30302692 (+)
129S1/SvImJ	ENSMUSG00200014520	lncRNA gene	Chr5:25789097-25793847 (+)
A/J	ENSMUSG00195049246	lncRNA gene	Chr5:25237122-25241868 (+)
AKR/J	ENSMUSG00220009718	lncRNA gene	Chr5:25254339-25259089 (+)
BALB/cJ	ENSMUSG00180038903	lncRNA gene	Chr5:25041733-25046479 (+)
C3H/HeJ	ENSMUSG00175048368	lncRNA gene	Chr5:27016103-27020849 (+)
C57BL/6NJ	ENSMUSG00215042536	lncRNA gene	Chr5:25760467-25765213 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006004	lincRNA gene	Chr5:24660764-24663076 (+)
CAST/EiJ	ENSTCUG00005025067	lncRNA gene	Chr5:25231118-25236133 (+)
CBA/J	ENSMUSG00210048748	lncRNA gene	Chr5:25989328-25994074 (+)
DBA/2J	ENSMUSG00185038073	lncRNA gene	Chr5:27851779-27856525 (+)
FVB/NJ	ENSMUSG00205043054	lncRNA gene	Chr5:24749415-24754161 (+)
JF1/MsJ	ENSUMUG00000054834	lncRNA gene	Chr5:32395881-32400626 (+)
LP/J	ENSMUSG00230048329	lncRNA gene	Chr5:32459595-32464345 (+)
NOD/ShiLtJ	ENSMUSG00190016941	lncRNA gene	Chr5:25048855-25053601 (+)
NZO/HlLtJ	ENSMUSG00225021448	lncRNA gene	Chr5:37676354-37681100 (+)
PWK/PhJ	ENSLUMG00010049086	lncRNA gene	Chr5:25150021-25154766 (+)
SPRET/EiJ	ENSMSPG00010045586	lncRNA gene	Chr5:26282912-26287668 (+)
WSB/EiJ	ENSIUOG00005044463	lncRNA gene	Chr5:27951546-27956292 (+)

Homology

• Gene Tree
  Gm4961
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm4961
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000104667 (Evidence)
• NCBI Gene
  242914

Representative Sequences			Length	Strain/Species
genomic	242914	NCBI Gene Model | MGI Sequence Detail	4747	C57BL/6J
transcript	NR_045694	RefSeq | MGI Sequence Detail	2249	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Diseases 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105