Gm5843 Pseudogene Detail

Summary

• Symbol
  Gm5843
• Name
  predicted gene 5843

• Feature Type
  pseudogene
• IDs
  MGI:3645250
  NCBI Gene: 545507
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:14787475-14794078 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 3.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  326 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645250	pseudogene	Chr3:14787475-14794686 (+)
129S1/SvImJ	ENSMUSG00200018249	pseudogene	Chr3:11529894-11537104 (+)
A/J	ENSMUSG00195015880	pseudogene	Chr3:11809707-11816919 (+)
AKR/J	ENSMUSG00220009301	pseudogene	Chr3:11867099-11874311 (+)
BALB/cJ	ENSMUSG00180001043	pseudogene	Chr3:11830608-11837819 (+)
C3H/HeJ	ENSMUSG00175003165	pseudogene	Chr3:11832951-11840162 (+)
C57BL/6NJ	ENSMUSG00215001418	pseudogene	Chr3:11829167-11836379 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037288	pseudogene	Chr3:10135620-10147095 (+)
CAST/EiJ	ENSTCUG00005024538	pseudogene	Chr3:11744246-11751163 (+)
CBA/J	ENSMUSG00210001667	pseudogene	Chr3:11801825-11809036 (+)
DBA/2J	ENSMUSG00185000641	pseudogene	Chr3:11811630-11818840 (+)
FVB/NJ	ENSMUSG00205002547	pseudogene	Chr3:11536440-11543651 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230004791	pseudogene	Chr3:13731813-13739023 (+)
NOD/ShiLtJ	ENSMUSG00190002458	pseudogene	Chr3:11912057-11919268 (+)
NZO/HlLtJ	ENSMUSG00225000804	pseudogene	Chr3:16308396-16315590 (+)
PWK/PhJ	ENSLUMG00010003495	pseudogene	Chr3:11774927-11782131 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001577	pseudogene	Chr3:11887225-11894436 (+)

Homology

• Gene Tree
  Gm5843
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084092 (Evidence)
• NCBI Gene
  545507

Representative Sequences			Length	Strain/Species
genomic	545507	NCBI Gene Model | MGI Sequence Detail	6604	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;