Gm5841 Pseudogene Detail

Summary

• Symbol
  Gm5841
• Name
  predicted gene 5841

• Feature Type
  pseudogene
• IDs
  MGI:3645248
  NCBI Gene: 545500
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:8392591-8394767 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 2.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645248	pseudogene	Chr3:8392382-8394967 (+)
129S1/SvImJ	ENSMUSG00200000896	pseudogene	Chr3:5055375-5057551 (+)
A/J	ENSMUSG00195001232	pseudogene	Chr3:5397325-5399501 (+)
AKR/J	ENSMUSG00220017212	pseudogene	Chr3:5399035-5401211 (+)
BALB/cJ	ENSMUSG00180007475	pseudogene	Chr3:5408920-5411096 (+)
C3H/HeJ	ENSMUSG00175005192	pseudogene	Chr3:5405887-5408063 (+)
C57BL/6NJ	ENSMUSG00215005525	pseudogene	Chr3:5421047-5423223 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000256	pseudogene	Chr3:5462112-5464291 (+)
CBA/J	ENSMUSG00210000661	pseudogene	Chr3:5391071-5393247 (+)
DBA/2J	ENSMUSG00185000550	pseudogene	Chr3:5378667-5380833 (+)
FVB/NJ	ENSMUSG00205006198	pseudogene	Chr3:5222748-5224924 (+)
JF1/MsJ	ENSUMUG00000010421	pseudogene	Chr3:5275004-5277183 (+)
LP/J	ENSMUSG00230000193	pseudogene	Chr3:7316393-7318569 (+)
NOD/ShiLtJ	ENSMUSG00190023579	pseudogene	Chr3:5491211-5493387 (+)
NZO/HlLtJ	ENSMUSG00225001491	pseudogene	Chr3:9889384-9891560 (+)
PWK/PhJ	ENSLUMG00010008451	pseudogene	Chr3:5329997-5332176 (+)
SPRET/EiJ	ENSMSPG00010000141	pseudogene	Chr3:5248146-5250321 (+)
WSB/EiJ	ENSIUOG00005000842	pseudogene	Chr3:5411634-5413810 (+)

Homology

• Gene Tree
  Gm5841
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000103921 (Evidence)
• NCBI Gene
  545500

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103921	Ensembl Gene Model | MGI Sequence Detail	2177	C57BL/6J
transcript	ENSMUST00000195307	Ensembl | MGI Sequence Detail	2177	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;