Gm5397 Pseudogene Detail

Summary

• Symbol
  Gm5397
• Name
  predicted gene 5397

• Feature Type
  pseudogene
• IDs
  MGI:3645241
  NCBI Gene: 385472
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:75239714-75242348 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  186 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645241	pseudogene	ChrX:75239714-75242569 (+)
129S1/SvImJ	ENSMUSG00200043088	pseudogene	ChrX:57269939-57272573 (+)
A/J	ENSMUSG00195035816	pseudogene	ChrX:60992744-60995378 (+)
AKR/J	ENSMUSG00220048016	pseudogene	ChrX:56134567-56137201 (+)
BALB/cJ	ENSMUSG00180050940	pseudogene	ChrX:57563273-57565907 (+)
C3H/HeJ	ENSMUSG00175036613	pseudogene	ChrX:61144878-61147512 (+)
C57BL/6NJ	ENSMUSG00215042765	pseudogene	ChrX:57641464-57644098 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043116	pseudogene	ChrX:58991201-58993834 (+)
CBA/J	ENSMUSG00210045528	pseudogene	ChrX:57827160-57829794 (+)
DBA/2J	ENSMUSG00185035327	pseudogene	ChrX:70248311-70250945 (+)
FVB/NJ	ENSMUSG00205039839	pseudogene	ChrX:57136999-57139633 (+)
JF1/MsJ	ENSUMUG00000026933	pseudogene	ChrX:91076123-91078757 (+)
LP/J	ENSMUSG00230037381	pseudogene	ChrX:76824870-76827504 (+)
NOD/ShiLtJ	ENSMUSG00190045783	pseudogene	ChrX:57085895-57088529 (+)
NZO/HlLtJ	ENSMUSG00225048145	pseudogene	ChrX:82032103-82034737 (+)
PWK/PhJ	ENSLUMG00010048167	pseudogene	ChrX:56709623-56712257 (+)
SPRET/EiJ	ENSMSPG00010038771	pseudogene	ChrX:60119959-60122594 (+)
WSB/EiJ	ENSIUOG00005049552	pseudogene	ChrX:57803798-57806432 (+)

Homology

• Gene Tree
  Gm5397
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082827 (Evidence)
• NCBI Gene
  385472

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082827	Ensembl Gene Model | MGI Sequence Detail	2635	C57BL/6J
transcript	ENSMUST00000121081	Ensembl | MGI Sequence Detail	1453	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;