Gm5509 Pseudogene Detail

Summary

• Symbol
  Gm5509
• Name
  predicted gene 5509

• Feature Type
  pseudogene
• IDs
  MGI:3645239
  NCBI Gene: 433204
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:79977547-79978776 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 53.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  194 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645239	pseudogene	Chr18:79977347-79978975 (+)
129S1/SvImJ	ENSMUSG00200029072	pseudogene	Chr18:77191908-77193140 (+)
A/J	ENSMUSG00195005118	pseudogene	Chr18:77275575-77276807 (+)
AKR/J	ENSMUSG00220018033	pseudogene	Chr18:77217157-77218389 (+)
BALB/cJ	ENSMUSG00180013441	pseudogene	Chr18:77845848-77847080 (+)
C3H/HeJ	ENSMUSG00175013513	pseudogene	Chr18:77388118-77389347 (+)
C57BL/6NJ	ENSMUSG00215026871	pseudogene	Chr18:76756752-76757981 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028666	pseudogene	Chr18:76298841-76300073 (+)
CBA/J	ENSMUSG00210037411	pseudogene	Chr18:77345164-77346393 (+)
DBA/2J	ENSMUSG00185011668	pseudogene	Chr18:77250392-77251621 (+)
FVB/NJ	ENSMUSG00205017357	pseudogene	Chr18:76672489-76673721 (+)
JF1/MsJ	ENSUMUG00000037866	pseudogene	Chr18:77148421-77149659 (+)
LP/J	ENSMUSG00230013929	pseudogene	Chr18:79298242-79299474 (+)
NOD/ShiLtJ	ENSMUSG00190023934	pseudogene	Chr18:77047545-77048774 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010006932	pseudogene	Chr18:77557842-77559080 (+)
SPRET/EiJ	ENSMSPG00010010166	pseudogene	Chr18:77896936-77898165 (+)
WSB/EiJ	ENSIUOG00005007866	pseudogene	Chr18:76726794-76728023 (+)

Homology

• Gene Tree
  Gm5509
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm5509
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000117669 (Evidence)
• NCBI Gene
  433204

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117669	Ensembl Gene Model | MGI Sequence Detail	1230	C57BL/6J
transcript	ENSMUST00000235834	Ensembl | MGI Sequence Detail	1230	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;