Cd9-ps Pseudogene Detail

Summary

• Symbol
  Cd9-ps
• Name
  Cd9 antigen, pseudogene
• Synonyms
  EG668579

• Feature Type
  pseudogene
• IDs
  MGI:3645134
  NCBI Gene: 668579
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:41332082-41332731 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645134	pseudogene	Chr7:41331675-41332812 (-)
129S1/SvImJ	ENSMUSG00200025498	pseudogene	Chr7:29138606-29139255 (-)
A/J	ENSMUSG00195051278	pseudogene	Chr7:32987102-32987751 (-)
AKR/J	ENSMUSG00220030577	pseudogene	Chr7:19808393-19809042 (-)
BALB/cJ	ENSMUSG00180045944	pseudogene	Chr7:30334849-30335498 (-)
C3H/HeJ	ENSMUSG00175045317	pseudogene	Chr7:30576403-30577052 (-)
C57BL/6NJ	ENSMUSG00215027672	pseudogene	Chr7:29610203-29610852 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049633	pseudogene	Chr7:33171470-33172119 (-)
CBA/J	ENSMUSG00210050255	pseudogene	Chr7:30649116-30649765 (-)
DBA/2J	ENSMUSG00185051467	pseudogene	Chr7:34525796-34526433 (-)
FVB/NJ	ENSMUSG00205047637	pseudogene	Chr7:30663095-30663732 (-)
JF1/MsJ	ENSUMUG00000032791	pseudogene	Chr7:39007047-39007684 (-)
LP/J	ENSMUSG00230014740	pseudogene	Chr7:39852309-39852958 (-)
NOD/ShiLtJ	ENSMUSG00190051141	pseudogene	Chr7:30859337-30859974 (-)
NZO/HlLtJ	ENSMUSG00225010556	pseudogene	Chr7:38226681-38227330 (-)
PWK/PhJ	ENSLUMG00010024533	pseudogene	Chr7:29415096-29415733 (-)
SPRET/EiJ	ENSMSPG00010006318	pseudogene	Chr7:29404261-29404618 (-)
WSB/EiJ	ENSIUOG00005030167	pseudogene	Chr7:30369721-30370358 (-)

Homology

• Gene Tree
  Cd9-ps
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000092193 (Evidence)
• NCBI Gene
  668579

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092193	Ensembl Gene Model | MGI Sequence Detail	650	C57BL/6J
transcript	ENSMUST00000174687	Ensembl | MGI Sequence Detail	650	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5

TSS for Cd9-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72116	Chr7:41332418-41332428 (-)	308 bp