Gm5470 Pseudogene Detail

Summary

• Symbol
  Gm5470
• Name
  predicted gene 5470

• Feature Type
  pseudogene
• IDs
  MGI:3645123
  NCBI Gene: 432947
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:41894715-41896138 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 16.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645123	pseudogene	Chr15:41894497-41896338 (-)
129S1/SvImJ	ENSMUSG00200028533	pseudogene	Chr15:38843971-38845394 (-)
A/J	ENSMUSG00195036629	pseudogene	Chr15:38850211-38851634 (-)
AKR/J	ENSMUSG00220031181	pseudogene	Chr15:38720516-38721939 (-)
BALB/cJ	ENSMUSG00180034521	pseudogene	Chr15:38815041-38816464 (-)
C3H/HeJ	ENSMUSG00175027464	pseudogene	Chr15:38975004-38976427 (-)
C57BL/6NJ	ENSMUSG00215027743	pseudogene	Chr15:38809373-38810796 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011264	pseudogene	Chr15:38809890-38811318 (-)
CBA/J	ENSMUSG00210018283	pseudogene	Chr15:38951686-38953109 (-)
DBA/2J	ENSMUSG00185035018	pseudogene	Chr15:38924716-38926139 (-)
FVB/NJ	ENSMUSG00205031352	pseudogene	Chr15:38809672-38811095 (-)
JF1/MsJ	ENSUMUG00000037777	pseudogene	Chr15:38764864-38766262 (-)
LP/J	ENSMUSG00230014481	pseudogene	Chr15:42226518-42227941 (-)
NOD/ShiLtJ	ENSMUSG00190034386	pseudogene	Chr15:38878943-38880366 (-)
NZO/HlLtJ	ENSMUSG00225037931	pseudogene	Chr15:42602966-42604389 (-)
PWK/PhJ	ENSLUMG00010032426	pseudogene	Chr15:38920470-38921868 (-)
SPRET/EiJ	ENSMSPG00010013971	pseudogene	Chr15:39753214-39754652 (-)
WSB/EiJ	ENSIUOG00005034317	pseudogene	Chr15:38882379-38883802 (-)

Homology

• Gene Tree
  Gm5470
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm5470
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116215 (Evidence)
• NCBI Gene
  432947

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116215	Ensembl Gene Model | MGI Sequence Detail	1424	C57BL/6J
transcript	ENSMUST00000229397	Ensembl | MGI Sequence Detail	1424	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm5470:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134160	Chr15:41897235-41897258 (-)	-1,109 bp