Gm5469 Pseudogene Detail

Summary

• Symbol
  Gm5469
• Name
  predicted gene 5469

• Feature Type
  pseudogene
• IDs
  MGI:3645122
  NCBI Gene: 432946
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:41785471-41786340 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 16.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645122	pseudogene	Chr15:41785471-41786547 (+)
129S1/SvImJ	ENSMUSG00200028184	pseudogene	Chr15:38741366-38742441 (+)
A/J	ENSMUSG00195037573	pseudogene	Chr15:38732692-38733767 (+)
AKR/J	ENSMUSG00220031494	pseudogene	Chr15:38617846-38618921 (+)
AKR/J	ENSMUSG00220004411	pseudogene	Chr1:4997686-5001004 (-)
BALB/cJ	ENSMUSG00180034031	pseudogene	Chr15:38705086-38706161 (+)
C3H/HeJ	ENSMUSG00175029598	pseudogene	Chr15:38872354-38873429 (+)
C57BL/6NJ	ENSMUSG00215027251	pseudogene	Chr15:38699611-38700686 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210018401	pseudogene	Chr15:38826182-38827257 (+)
DBA/2J	ENSMUSG00185035829	pseudogene	Chr15:38807040-38808115 (+)
FVB/NJ	ENSMUSG00205032590	pseudogene	Chr15:38691971-38693046 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230014415	pseudogene	Chr15:42123934-42125009 (+)
NOD/ShiLtJ	ENSMUSG00190034626	pseudogene	Chr15:38761240-38762315 (+)
NZO/HlLtJ	ENSMUSG00225038013	pseudogene	Chr15:42485275-42486350 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005034659	pseudogene	Chr15:38780007-38781082 (+)

Homology

• Gene Tree
  Gm5469
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm5469
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000116083 (Evidence)
• NCBI Gene
  432946

Representative Sequences			Length	Strain/Species
genomic	432946	NCBI Gene Model | MGI Sequence Detail	870	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6