Gm5406 Pseudogene Detail

Summary

• Symbol
  Gm5406
• Name
  predicted gene 5406

• Feature Type
  pseudogene
• IDs
  MGI:3645119
  NCBI Gene: 385905
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:45231943-45232708 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 29.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645119	pseudogene	Chr16:45231890-45232824 (+)
129S1/SvImJ	ENSMUSG00200021639	pseudogene	Chr16:42129194-42129958 (+)
A/J	ENSMUSG00195003599	pseudogene	Chr16:41737481-41738245 (+)
AKR/J	ENSMUSG00220022804	pseudogene	Chr16:42089503-42090267 (+)
BALB/cJ	ENSMUSG00180029369	pseudogene	Chr16:41942413-41943177 (+)
C3H/HeJ	ENSMUSG00175026016	pseudogene	Chr16:42196225-42196990 (+)
C57BL/6NJ	ENSMUSG00215009014	pseudogene	Chr16:42016070-42016835 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012833	pseudogene	Chr16:42422103-42422867 (+)
CBA/J	ENSMUSG00210016862	pseudogene	Chr16:42218841-42219606 (+)
DBA/2J	ENSMUSG00185011263	pseudogene	Chr16:42122101-42122865 (+)
FVB/NJ	ENSMUSG00205012916	pseudogene	Chr16:41988780-41989544 (+)
JF1/MsJ	ENSUMUG00000031498	pseudogene	Chr16:42331794-42332559 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190019171	pseudogene	Chr16:42127257-42128021 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010027941	pseudogene	Chr16:42209462-42210227 (+)
SPRET/EiJ	ENSMSPG00010007556	pseudogene	Chr16:42368920-42369684 (+)
WSB/EiJ	ENSIUOG00005013648	pseudogene	Chr16:42298534-42299298 (+)

Homology

• Gene Tree
  Gm5406
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000080715 (Evidence)
• NCBI Gene
  385905

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080715	Ensembl Gene Model | MGI Sequence Detail	766	C57BL/6J
transcript	ENSMUST00000120054	Ensembl | MGI Sequence Detail	766	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5406:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138625	Chr16:45231883-45231889 (+)	-57 bp