Gm4938 Pseudogene Detail

Summary

• Symbol
  Gm4938
• Name
  predicted pseudogene 4938

• Feature Type
  pseudogene
• IDs
  MGI:3645099
  NCBI Gene: 238836
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:105055288-105055684 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 56.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645099	pseudogene	Chr13:105055181-105056055 (+)
129S1/SvImJ	ENSMUSG00200009044	pseudogene	Chr13:99476087-99476483 (+)
A/J	ENSMUSG00195030716	pseudogene	Chr13:100068969-100069365 (+)
AKR/J	ENSMUSG00220029544	pseudogene	Chr13:98493151-98493547 (+)
BALB/cJ	ENSMUSG00180030995	pseudogene	Chr13:100625924-100626320 (+)
C3H/HeJ	ENSMUSG00175017858	pseudogene	Chr13:100707410-100707806 (+)
C57BL/6NJ	ENSMUSG00215025525	pseudogene	Chr13:100702738-100703134 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011744	pseudogene	Chr13:99847954-99848350 (+)
CBA/J	ENSMUSG00210011921	pseudogene	Chr13:100028372-100028768 (+)
DBA/2J	ENSMUSG00185027743	pseudogene	Chr13:103779615-103780011 (+)
FVB/NJ	ENSMUSG00205038111	pseudogene	Chr13:99475991-99476387 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230008390	pseudogene	Chr13:113945770-113946166 (+)
NOD/ShiLtJ	ENSMUSG00190043382	pseudogene	Chr13:100384018-100384414 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010027087	pseudogene	Chr13:99407420-99407816 (+)
SPRET/EiJ	ENSMSPG00010009653	pseudogene	Chr13:100831180-100831576 (+)
WSB/EiJ	ENSIUOG00005036321	pseudogene	Chr13:99477305-99477701 (+)

Homology

• Gene Tree
  Gm4938
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000114326 (Evidence)
• NCBI Gene
  238836

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114326	Ensembl Gene Model | MGI Sequence Detail	397	C57BL/6J
transcript	ENSMUST00000171334	Ensembl | MGI Sequence Detail	397	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:224673 Maehara K, et al., Tissue-specific expression of histone H3 variants diversified after species separation. Epigenetics Chromatin. 2015;8:35

TSS for Gm4938:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120941	Chr13:105055178-105055181 (+)	-108 bp