Gm6721 Pseudogene Detail

Summary

• Symbol
  Gm6721
• Name
  predicted gene 6721

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3645077
  NCBI Gene: 626940
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:85643673-85645117 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 41.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645077	pseudogene	Chr10:85643536-85658609 (+)
129S1/SvImJ	ENSMUSG00200028266	protein coding gene	Chr10:82115306-82152995 (+)
129S1/SvImJ	ENSMUSG00200029930	pseudogene	Chr10:82137930-82139374 (+)
A/J	ENSMUSG00195023361	pseudogene	Chr10:82587814-82589258 (+)
A/J	ENSMUSG00195021333	protein coding gene	Chr10:82565186-82602885 (+)
AKR/J	ENSMUSG00220020333	protein coding gene	Chr10:82167497-82205179 (+)
AKR/J	ENSMUSG00220021988	pseudogene	Chr10:82190108-82191552 (+)
BALB/cJ	ENSMUSG00180034382	pseudogene	Chr10:82590938-82592382 (+)
BALB/cJ	ENSMUSG00180031271	protein coding gene	Chr10:82568310-82606001 (+)
C3H/HeJ	ENSMUSG00175022678	pseudogene	Chr10:82466795-82468239 (+)
C3H/HeJ	ENSMUSG00175022377	protein coding gene	Chr10:82447984-82481864 (+)
C57BL/6NJ	ENSMUSG00215025931	pseudogene	Chr10:82135245-82136689 (+)
C57BL/6NJ	ENSMUSG00215023773	protein coding gene	Chr10:82112621-82150316 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035408	pseudogene	Chr10:81899582-81901033 (+)
CBA/J	ENSMUSG00210034535	pseudogene	Chr10:82317527-82318971 (+)
CBA/J	ENSMUSG00210031980	protein coding gene	Chr10:82294900-82332594 (+)
DBA/2J	ENSMUSG00185037634	protein coding gene	Chr10:82508758-82546665 (+)
DBA/2J	ENSMUSG00185042701	pseudogene	Chr10:82531600-82533044 (+)
FVB/NJ	ENSMUSG00205017829	protein coding gene	Chr10:82165310-82203317 (+)
FVB/NJ	ENSMUSG00205020311	pseudogene	Chr10:82188248-82189692 (+)
JF1/MsJ	ENSUMUG00000022916	pseudogene	Chr10:83909289-83910740 (+)
LP/J	ENSMUSG00230015704	protein coding gene	Chr10:84401211-84439104 (+)
LP/J	ENSMUSG00230018327	pseudogene	Chr10:84424039-84425483 (+)
NOD/ShiLtJ	ENSMUSG00190018488	pseudogene	Chr10:82573478-82574922 (+)
NOD/ShiLtJ	ENSMUSG00190016358	protein coding gene	Chr10:82550855-82588545 (+)
NZO/HlLtJ	ENSMUSG00225048544	protein coding gene	Chr10:88674110-88711802 (+)
NZO/HlLtJ	ENSMUSG00225053652	pseudogene	Chr10:88696733-88698177 (+)
PWK/PhJ	ENSLUMG00010023171	pseudogene	Chr10:82189032-82190483 (+)
SPRET/EiJ	ENSMSPG00010035848	pseudogene	Chr10:83543527-83544972 (-)
WSB/EiJ	ENSIUOG00005039093	pseudogene	Chr10:82284276-82285720 (+)

Homology

• Gene Tree
  Gm6721
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6721
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  9

• Ensembl
  ENSMUSG00000112318 (Evidence)
• NCBI Gene
  626940

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112318	Ensembl Gene Model | MGI Sequence Detail	1445	C57BL/6J
transcript	ENSMUST00000218353	Ensembl | MGI Sequence Detail	1445	Not Applicable
polypeptide	NP_001371156	RefSeq | MGI Sequence Detail	482	C57BL/6

Other
Accession IDs

MGI:3779624

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87