Gm6342 Pseudogene Detail

Summary

• Symbol
  Gm6342
• Name
  predicted gene 6342

• Feature Type
  pseudogene
• IDs
  MGI:3645065
  NCBI Gene: 622683
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:83821421-83822107 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 36.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645065	pseudogene	Chr6:83821312-83822107 (-)
129S1/SvImJ	ENSMUSG00200012620	pseudogene	Chr6:80790409-80791174 (-)
A/J	ENSMUSG00195012377	pseudogene	Chr6:80469302-80470067 (-)
AKR/J	ENSMUSG00220002247	pseudogene	Chr6:79419219-79419984 (-)
BALB/cJ	ENSMUSG00180010148	pseudogene	Chr6:80845355-80846120 (-)
C3H/HeJ	ENSMUSG00175043731	pseudogene	Chr6:96565692-96566457 (+)
C57BL/6NJ	ENSMUSG00215016347	pseudogene	Chr6:80841076-80841841 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011965	pseudogene	Chr6:80015840-80016606 (-)
CAST/EiJ	ENSTCUG00005008325	pseudogene	Chr6:80847472-80848236 (-)
CBA/J	ENSMUSG00210011288	pseudogene	Chr6:80659297-80660062 (-)
DBA/2J	ENSMUSG00185044317	pseudogene	Chr6:81206452-81207217 (-)
FVB/NJ	ENSMUSG00205026530	pseudogene	Chr6:79886974-79887739 (-)
JF1/MsJ	ENSUMUG00000022227	pseudogene	Chr6:80264153-80264917 (-)
LP/J	ENSMUSG00230050612	pseudogene	Chr6:82347628-82348393 (-)
NOD/ShiLtJ	ENSMUSG00190001845	pseudogene	Chr6:80290065-80290830 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010006299	pseudogene	Chr6:79610866-79611630 (-)
SPRET/EiJ	ENSMSPG00010044474	pseudogene	Chr6:81743297-81744061 (-)
WSB/EiJ	ENSIUOG00005018640	pseudogene	Chr6:81224364-81225129 (-)

Homology

• Gene Tree
  Gm6342
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm6342
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000107644 (Evidence)
• NCBI Gene
  622683

Representative Sequences			Length	Strain/Species
genomic	622683	NCBI Gene Model | MGI Sequence Detail	687	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm6342:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61715	Chr6:83822099-83822109 (-)	3 bp