Gm6900 Pseudogene Detail

Summary

• Symbol
  Gm6900
• Name
  predicted gene 6900

• Feature Type
  pseudogene
• IDs
  MGI:3645052
  NCBI Gene: 628596
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:10390406-10390747 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 6.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645052	pseudogene	Chr7:10390233-10390901 (-)
129S1/SvImJ	ENSMUSG00200042860	pseudogene	Chr7:4742162-4742503 (-)
A/J	ENSMUSG00195052375	pseudogene	Chr7:4595635-4595976 (-)
AKR/J	ENSMUSG00220027517	pseudogene	Chr7:4316731-4317072 (-)
BALB/cJ	ENSMUSG00180051995	pseudogene	Chr7:4472258-4472599 (-)
C3H/HeJ	ENSMUSG00175050695	pseudogene	Chr7:4629981-4630322 (-)
C57BL/6NJ	ENSMUSG00215045575	pseudogene	Chr7:5093818-5094159 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210047914	pseudogene	Chr7:4416406-4416747 (-)
DBA/2J	ENSMUSG00185048316	pseudogene	Chr7:7263733-7264074 (-)
FVB/NJ	ENSMUSG00205046242	pseudogene	Chr7:4908965-4909306 (-)
JF1/MsJ	ENSUMUG00000053049	pseudogene	Chr7:7270317-7270657 (-)
LP/J	ENSMUSG00230048680	pseudogene	Chr7:11446100-11446441 (-)
NOD/ShiLtJ	ENSMUSG00190052841	pseudogene	Chr7:4673027-4673368 (-)
NZO/HlLtJ	ENSMUSG00225022156	pseudogene	Chr7:9298012-9298353 (-)
PWK/PhJ	ENSLUMG00010051969	pseudogene	Chr7:8531460-8531801 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005052770	pseudogene	Chr7:4810139-4810480 (-)

Homology

• Gene Tree
  Gm6900
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1
• CCDS
  CCDS52010.1

• Ensembl
  ENSMUSG00000093826 (Evidence)
• NCBI Gene
  628596

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093826	Ensembl Gene Model | MGI Sequence Detail	342	C57BL/6J
transcript	ENSMUST00000178971	Ensembl | MGI Sequence Detail	342	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;

TSS for Gm6900:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70618	Chr7:10390895-10390904 (-)	-153 bp