Gm5962 Pseudogene Detail

Summary

• Symbol
  Gm5962
• Name
  predicted gene 5962

• Feature Type
  pseudogene
• IDs
  MGI:3645008
  NCBI Gene: 102640277
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:21659800-21660294 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 12.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645008	pseudogene	Chr16:21659771-21660327 (-)
129S1/SvImJ	ENSMUSG00200047848	pseudogene	Chr16:18659049-18659543 (-)
A/J	ENSMUSG00195038057	pseudogene	Chr16:18217342-18217836 (-)
AKR/J	ENSMUSG00220046352	pseudogene	Chr16:18536772-18537266 (-)
BALB/cJ	ENSMUSG00180040671	pseudogene	Chr16:18457946-18458440 (-)
C3H/HeJ	ENSMUSG00175051004	pseudogene	Chr16:18602938-18603432 (-)
C57BL/6NJ	ENSMUSG00215042593	pseudogene	Chr16:18330133-18330627 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045929	pseudogene	Chr16:18944349-18944842 (-)
CBA/J	ENSMUSG00210048400	pseudogene	Chr16:18624653-18625147 (-)
DBA/2J	ENSMUSG00185034992	pseudogene	Chr16:18563417-18563911 (-)
FVB/NJ	ENSMUSG00205048633	pseudogene	Chr16:18561574-18562068 (-)
JF1/MsJ	ENSUMUG00000054950	pseudogene	Chr16:18785202-18785696 (-)
LP/J	ENSMUSG00230033588	pseudogene	Chr16:21142595-21143089 (-)
NOD/ShiLtJ	ENSMUSG00190050399	pseudogene	Chr16:18704902-18705396 (-)
NZO/HlLtJ	ENSMUSG00225038915	pseudogene	Chr16:24393638-24394132 (-)
PWK/PhJ	ENSLUMG00010049288	pseudogene	Chr16:18613360-18613854 (-)
SPRET/EiJ	ENSMSPG00010048128	pseudogene	Chr16:18490917-18491411 (-)
WSB/EiJ	ENSIUOG00005043953	pseudogene	Chr16:18789350-18789844 (-)

Homology

• Gene Tree
  Gm5962
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116535 (Evidence)
• NCBI Gene
  102640277

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116535	Ensembl Gene Model | MGI Sequence Detail	495	C57BL/6J
transcript	ENSMUST00000231614	Ensembl | MGI Sequence Detail	495	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;