Gm15013 Pseudogene Detail

Summary

• Symbol
  Gm15013
• Name
  predicted gene 15013
• Synonyms
  EG546380

• Feature Type
  pseudogene
• IDs
  MGI:3644991
  NCBI Gene: 100417274
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:138614430-138615230 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 61.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644991	pseudogene	ChrX:138614346-138615254 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036126	protein coding gene	ChrX:137219524-137221495 (-)
A/J	MGP_AJ_G0032100	protein coding gene	Chr7:42001353-42002147 (-)
AKR/J	MGP_AKRJ_G0036029	protein coding gene	ChrX:140996765-140997761 (-)
BALB/cJ	MGP_BALBcJ_G0036094	protein coding gene	ChrX:134954899-134955895 (-)
C3H/HeJ	MGP_C3HHeJ_G0035803	protein coding gene	ChrX:137254713-137255381 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0036619	protein coding gene	ChrX:141260455-141261255 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025551	protein coding gene	Chr3:106289957-106290746 (+)
CAST/EiJ	MGP_CASTEiJ_G0035094	protein coding gene	ChrX:118059085-118059721 (-)
CBA/J	MGP_CBAJ_G0035780	protein coding gene	ChrX:145576689-145580405 (-)
DBA/2J	MGP_DBA2J_G0035937	protein coding gene	ChrX:135782404-135783400 (-)
FVB/NJ	MGP_FVBNJ_G0035871	protein coding gene	ChrX:135012540-135013536 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0035908	protein coding gene	ChrX:153097582-153098578 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036655	protein coding gene	ChrX:136535108-136535901 (-)
PWK/PhJ	MGP_PWKPhJ_G0034787	protein coding gene	ChrX:114982581-114983577 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0026501	protein coding gene	Chr3:110905180-110905983 (+)
WSB/EiJ	MGP_WSBEiJ_G0035229	protein coding gene	ChrX:134862027-134862829 (-)

Homology

• MGI Vertebrate Homology
  Gm15013 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Gm15013
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000098559 (Evidence)
• NCBI Gene
  100417274

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098559	Ensembl Gene Model | MGI Sequence Detail	801	C57BL/6J
transcript	ENSMUST00000183537	Ensembl | MGI Sequence Detail	801	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm15013:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164218	ChrX:138615252-138615256 (-)	-24 bp