Gm5946 Pseudogene Detail

Summary

• Symbol
  Gm5946
• Name
  predicted gene 5946

• Feature Type
  pseudogene
• IDs
  MGI:3644989
  NCBI Gene: 546387
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:149005362-149006331 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644989	pseudogene	ChrX:149003712-149009015 (-)
129S1/SvImJ	ENSMUSG00200033881	pseudogene	ChrX:125793092-125798397 (-)
A/J	ENSMUSG00195021535	pseudogene	ChrX:130803221-130808526 (-)
AKR/J	ENSMUSG00220036760	pseudogene	ChrX:122807581-122812886 (-)
BALB/cJ	ENSMUSG00180041494	pseudogene	ChrX:126195508-126200813 (-)
C3H/HeJ	ENSMUSG00175030343	pseudogene	ChrX:130718043-130723348 (-)
C57BL/6NJ	ENSMUSG00215030623	pseudogene	ChrX:126482799-126488104 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036854	pseudogene	Chr2:15124591-15127277 (+)
CAST/EiJ	ENSTCUG00005037612	pseudogene	ChrX:128517150-128522454 (-)
CBA/J	ENSMUSG00210034106	pseudogene	ChrX:128195408-128200713 (-)
DBA/2J	ENSMUSG00185046714	pseudogene	ChrX:143016848-143022153 (-)
FVB/NJ	ENSMUSG00205030517	pseudogene	ChrX:126726679-126731984 (-)
JF1/MsJ	ENSUMUG00000044384	pseudogene	ChrX:163231959-163237266 (-)
LP/J	ENSMUSG00230032781	pseudogene	ChrX:149812625-149817930 (-)
NOD/ShiLtJ	ENSMUSG00190039114	pseudogene	ChrX:127312348-127317653 (-)
NZO/HlLtJ	ENSMUSG00225042459	pseudogene	ChrX:153316145-153321450 (-)
PWK/PhJ	ENSLUMG00010034464	pseudogene	ChrX:124768039-124780022 (-)
SPRET/EiJ	ENSMSPG00010042420	pseudogene	ChrX:129581417-129586707 (-)
WSB/EiJ	ENSIUOG00005039720	pseudogene	ChrX:127786518-127791823 (-)

Homology

• Gene Tree
  Gm5946
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Targeted
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000048592 (Evidence)
• NCBI Gene
  546387

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000048592	Ensembl Gene Model | MGI Sequence Detail	970	C57BL/6J
transcript	ENSMUST00000182340	Ensembl | MGI Sequence Detail	970	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;