Gm7444 Pseudogene Detail

Summary

• Symbol
  Gm7444
• Name
  predicted gene 7444

• Feature Type
  pseudogene
• IDs
  MGI:3644944
  NCBI Gene: 665005
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:55935026-55937453 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 30.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  234 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644944	pseudogene	Chr9:55934920-55938857 (+)
129S1/SvImJ	ENSMUSG00200035753	pseudogene	Chr9:53050449-53052877 (+)
A/J	ENSMUSG00195042585	pseudogene	Chr9:52749081-52751509 (+)
AKR/J	ENSMUSG00220032413	pseudogene	Chr9:52886254-52888682 (+)
BALB/cJ	ENSMUSG00180019636	pseudogene	Chr9:52874147-52876574 (+)
C3H/HeJ	ENSMUSG00175022076	pseudogene	Chr9:52876001-52878429 (+)
C57BL/6NJ	ENSMUSG00215036392	pseudogene	Chr9:52867523-52869950 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210042685	pseudogene	Chr9:52974781-52977209 (+)
DBA/2J	ENSMUSG00185043173	pseudogene	Chr9:53006426-53008854 (+)
FVB/NJ	ENSMUSG00205043353	pseudogene	Chr9:53318335-53320763 (+)
JF1/MsJ	ENSUMUG00000049701	pseudogene	Chr9:53019637-53022065 (+)
LP/J	ENSMUSG00230039403	pseudogene	Chr9:53250393-53252821 (+)
NOD/ShiLtJ	ENSMUSG00190044988	pseudogene	Chr9:53073800-53076228 (+)
NZO/HlLtJ	ENSMUSG00225028703	pseudogene	Chr9:53281453-53283881 (+)
PWK/PhJ	ENSLUMG00010039761	pseudogene	Chr9:52986764-52989192 (+)
SPRET/EiJ	ENSMSPG00010027979	pseudogene	Chr9:54021468-54023898 (+)
WSB/EiJ	ENSIUOG00005041887	pseudogene	Chr9:52483920-52486348 (+)

Homology

• Gene Tree
  Gm7444
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000110989 (Evidence)
• NCBI Gene
  665005

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110989	Ensembl Gene Model | MGI Sequence Detail	2428	C57BL/6J
transcript	ENSMUST00000217455	Ensembl | MGI Sequence Detail	2428	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 3

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for Gm7444:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85225	Chr9:55934768-55934792 (+)	-246 bp
Tssr85226	Chr9:55934798-55934816 (+)	-219 bp