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Gm5898 Pseudogene Detail
Summary
  • Symbol
    Gm5898
  • Name
    predicted gene 5898
  • Feature Type
    pseudogene
  • IDs
    MGI:3644921
    NCBI Gene: 545971
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr7:63192227-63194297 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 34.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    66 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644921
 pseudogene Chr7:63192227-63195599 (+)
129S1/SvImJ MGP_129S1SvImJ_G0010918
 pseudogene Chr12:74313956-74318064 (+)
A/J MGP_AJ_G0010924
 pseudogene Chr12:71533908-71535813 (+)
AKR/J MGP_AKRJ_G0010879
 pseudogene Chr12:73681207-73684735 (+)
BALB/cJ MGP_BALBcJ_G0010900
 pseudogene Chr12:72002295-72004302 (+)
C3H/HeJ MGP_C3HHeJ_G0010795
 pseudogene Chr12:74138745-74140632 (+)
C57BL/6NJ MGP_C57BL6NJ_G0011170
 pseudogene Chr12:76592752-76594693 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0010729
 pseudogene Chr3:3820017-3821863 (-)
CAST/EiJ MGP_CASTEiJ_G0010627
 pseudogene Chr12:68927989-68929879 (+)
CBA/J MGP_CBAJ_G0010771
 pseudogene Chr12:79567041-79570894 (+)
DBA/2J MGP_DBA2J_G0010817
 pseudogene Chr12:71399255-71401640 (+)
FVB/NJ MGP_FVBNJ_G0010830
 pseudogene Chr12:70243663-70245989 (+)
LP/J MGP_LPJ_G0010900
 pseudogene Chr12:74316320-74318240 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0010811
 pseudogene Chr12:82638498-82641215 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0011155
 pseudogene Chr12:73176367-73178296 (+)
PWK/PhJ MGP_PWKPhJ_G0010517
 pseudogene Chr12:65734435-65736956 (+)
SPRET/EiJ MGP_SPRETEiJ_G0010330
 pseudogene Chr12:67611331-67614839 (+)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    4 involving Gm5898
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000081788 Ensembl Gene Model | MGI Sequence Detail 2071 C57BL/6J ±  kb
transcript ENSMUST00000121016 Ensembl | MGI Sequence Detail 2071 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 14
    Phenotypes 10
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory