Gm5100 Pseudogene Detail

Summary

• Symbol
  Gm5100
• Name
  predicted gene 5100

• Feature Type
  pseudogene
• IDs
  MGI:3644919
  NCBI Gene: 329126
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:39636585-39637173 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 18.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644919	pseudogene	Chr1:39636581-39640174 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010086	pseudogene	Chr1:38346204-38346792 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009073	pseudogene	Chr1:34237100-34237729 (-)
CAST/EiJ	MGP_CASTEiJ_G0009827	pseudogene	Chr1:37922689-37923295 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0010287	pseudogene	Chr1:37900482-37901070 (-)
PWK/PhJ	MGP_PWKPhJ_G0009736	pseudogene	Chr1:36376233-36376910 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009550	pseudogene	Chr1:37829364-37829968 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5100
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5100
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000102471 (Evidence)
• NCBI Gene
  329126

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102471	Ensembl Gene Model | MGI Sequence Detail	589	C57BL/6J
transcript	ENSMUST00000195631	Ensembl | MGI Sequence Detail	589	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;