Gm5099 Gene Detail

Summary

• Symbol
  Gm5099
• Name
  predicted gene 5099

• Feature Type
  lncRNA gene
• IDs
  MGI:3644917
  NCBI Gene: 329123
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:38171164-38198973 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  195 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644917	lncRNA gene	Chr1:38171164-38198973 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004806	lincRNA gene	Chr1:36796827-36824611 (+)
A/J	MGP_AJ_G0004787	lincRNA gene	Chr1:35788434-35816189 (+)
AKR/J	MGP_AKRJ_G0004766	lincRNA gene	Chr1:36276695-36304462 (+)
BALB/cJ	MGP_BALBcJ_G0004769	lincRNA gene	Chr1:35439218-35466984 (+)
C3H/HeJ	MGP_C3HHeJ_G0004717	lincRNA gene	Chr1:36504630-36532370 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004919	lincRNA gene	Chr1:38388984-38417745 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004351	lincRNA gene	Chr1:32762473-32790526 (+)
CAST/EiJ	MGP_CASTEiJ_G0004673	lincRNA gene	Chr1:36367476-36395300 (+)
CBA/J	MGP_CBAJ_G0004710	lincRNA gene	Chr1:39448264-39478049 (+)
DBA/2J	MGP_DBA2J_G0004728	lincRNA gene	Chr1:35084650-35112448 (+)
FVB/NJ	MGP_FVBNJ_G0004748	lincRNA gene	Chr1:34613591-34641401 (+)
LP/J	MGP_LPJ_G0004807	lincRNA gene	Chr1:37143313-37172469 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004733	lincRNA gene	Chr1:41594499-41623060 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004923	lincRNA gene	Chr1:36349713-36377500 (+)
PWK/PhJ	MGP_PWKPhJ_G0004625	lincRNA gene	Chr1:34873480-34902353 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004552	lincRNA gene	Chr1:36299990-36327661 (+)
WSB/EiJ	MGP_WSBEiJ_G0004715	lincRNA gene	Chr1:36305848-36334243 (+)

Homology

• Gene Tree
  Gm5099
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5099
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000102716 (Evidence)
• NCBI Gene
  329123

Representative Sequences			Length	Strain/Species
genomic	329123	NCBI Gene Model | MGI Sequence Detail	27810	C57BL/6J
transcript	NR_151587	RefSeq | MGI Sequence Detail	1848	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;