Gm5099 Gene Detail

Summary

• Symbol
  Gm5099
• Name
  predicted gene 5099

• Feature Type
  lncRNA gene
• IDs
  MGI:3644917
  NCBI Gene: 329123
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:38171164-38198973 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  875 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644917	lncRNA gene	Chr1:38171163-38198973 (+)
129S1/SvImJ	ENSMUSG00200004765	lncRNA gene	Chr1:35761410-35789230 (+)
A/J	ENSMUSG00195043960	lncRNA gene	Chr1:35410271-35438040 (+)
AKR/J	ENSMUSG00220009886	lncRNA gene	Chr1:35428430-35456241 (+)
BALB/cJ	ENSMUSG00180012239	lncRNA gene	Chr1:35506931-35534730 (+)
C3H/HeJ	ENSMUSG00175001511	lncRNA gene	Chr1:35413940-35441721 (+)
C57BL/6NJ	ENSMUSG00215035679	lncRNA gene	Chr1:35483868-35511682 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004351	lincRNA gene	Chr1:32762473-32790526 (+)
CAST/EiJ	ENSTCUG00005003172	lncRNA gene	Chr1:35558598-35586444 (+)
CBA/J	ENSMUSG00210006763	lncRNA gene	Chr1:35240891-35268702 (+)
DBA/2J	ENSMUSG00185011280	lncRNA gene	Chr1:36340503-36368326 (+)
FVB/NJ	ENSMUSG00205038303	lncRNA gene	Chr1:35436727-35464573 (+)
JF1/MsJ	ENSUMUG00000031799	lncRNA gene	Chr1:35543256-35571091 (+)
LP/J	ENSMUSG00230026768	lncRNA gene	Chr1:36382241-36410046 (+)
NOD/ShiLtJ	ENSMUSG00190043969	lncRNA gene	Chr1:35444586-35472366 (+)
NZO/HlLtJ	ENSMUSG00225014186	lncRNA gene	Chr1:39623242-39651061 (+)
PWK/PhJ	ENSLUMG00010036561	lncRNA gene	Chr1:35082490-35110370 (+)
SPRET/EiJ	ENSMSPG00010029939	lncRNA gene	Chr1:36558535-36586227 (+)
WSB/EiJ	ENSIUOG00005040882	lncRNA gene	Chr1:35370381-35398230 (+)

Homology

• Gene Tree
  Gm5099
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5099
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000102716 (Evidence)
• NCBI Gene
  329123

Representative Sequences			Length	Strain/Species
genomic	329123	NCBI Gene Model | MGI Sequence Detail	27810	C57BL/6J
transcript	NR_151587	RefSeq | MGI Sequence Detail	1848	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;