Gm5223 Pseudogene Detail

Summary

• Symbol
  Gm5223
• Name
  predicted gene 5223

• Feature Type
  pseudogene
• IDs
  MGI:3644871
  NCBI Gene: 383211
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:17001883-17003149 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 9.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  76 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644871	pseudogene	Chr17:17001765-17003473 (+)
129S1/SvImJ	ENSMUSG00200038636	pseudogene	Chr17:12630382-12631648 (+)
A/J	ENSMUSG00195038344	pseudogene	Chr17:13384183-13385449 (+)
AKR/J	ENSMUSG00220026726	pseudogene	Chr17:13073768-13075034 (+)
BALB/cJ	ENSMUSG00180017511	pseudogene	Chr17:12623229-12624495 (+)
C3H/HeJ	ENSMUSG00175041122	pseudogene	Chr17:12502357-12503623 (+)
C57BL/6NJ	ENSMUSG00215043741	pseudogene	Chr17:12712722-12713988 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023869	pseudogene	Chr17:13005208-13006475 (+)
CBA/J	ENSMUSG00210041432	pseudogene	Chr17:12346357-12347623 (+)
DBA/2J	ENSMUSG00185040915	pseudogene	Chr17:14351315-14352581 (+)
FVB/NJ	ENSMUSG00205033106	pseudogene	Chr17:13005897-13007163 (+)
JF1/MsJ	ENSUMUG00000038259	pseudogene	Chr17:13900757-13902023 (+)
LP/J	ENSMUSG00230027863	pseudogene	Chr17:15749535-15750801 (+)
NOD/ShiLtJ	ENSMUSG00190037288	pseudogene	Chr17:12775791-12777057 (+)
NZO/HlLtJ	ENSMUSG00225048498	pseudogene	Chr17:17703162-17704428 (+)
PWK/PhJ	ENSLUMG00010020557	pseudogene	Chr17:12628991-12630257 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005041181	pseudogene	Chr17:13413778-13415044 (+)

Homology

• Gene Tree
  Gm5223
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000116804 (Evidence)
• NCBI Gene
  383211

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116804	Ensembl Gene Model | MGI Sequence Detail	1267	C57BL/6J
transcript	ENSMUST00000231738	Ensembl | MGI Sequence Detail	1267	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;