Gm6278 Pseudogene Detail

Summary

• Symbol
  Gm6278
• Name
  predicted gene 6278

• Feature Type
  pseudogene
• IDs
  MGI:3644862
  NCBI Gene: 622000
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:85441140-85441911 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 47.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644862	pseudogene	Chr16:85441140-85441911 (+)
129S1/SvImJ	ENSMUSG00200038577	pseudogene	Chr16:82339618-82340389 (+)
A/J	ENSMUSG00195030373	pseudogene	Chr16:82140106-82140823 (+)
AKR/J	ENSMUSG00220016214	pseudogene	Chr16:82287561-82288332 (+)
BALB/cJ	ENSMUSG00180015202	pseudogene	Chr16:82185973-82186717 (+)
C3H/HeJ	ENSMUSG00175016338	pseudogene	Chr16:82500039-82500756 (+)
C57BL/6NJ	ENSMUSG00215035416	pseudogene	Chr16:82305824-82306595 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020637	pseudogene	Chr16:81945944-81946684 (+)
CBA/J	ENSMUSG00210044612	pseudogene	Chr16:82411864-82412608 (+)
DBA/2J	ENSMUSG00185035511	pseudogene	Chr16:82351913-82352630 (+)
FVB/NJ	ENSMUSG00205028148	pseudogene	Chr16:82169156-82169873 (+)
JF1/MsJ	ENSUMUG00000044242	pseudogene	Chr16:82470329-82471068 (+)
LP/J	ENSMUSG00230036070	pseudogene	Chr16:84900815-84901586 (+)
NOD/ShiLtJ	ENSMUSG00190028013	pseudogene	Chr16:82357228-82357945 (+)
NZO/HlLtJ	ENSMUSG00225031461	pseudogene	Chr16:88042458-88043202 (+)
PWK/PhJ	ENSLUMG00010014368	pseudogene	Chr16:82138572-82139311 (+)
SPRET/EiJ	ENSMSPG00010032485	pseudogene	Chr16:83111439-83112152 (+)
WSB/EiJ	ENSIUOG00005021952	pseudogene	Chr16:82309444-82310215 (+)

Homology

• Gene Tree
  Gm6278
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  1
• Genomic Mutations
  2 involving Gm6278
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116972 (Evidence)
• NCBI Gene
  622000

Representative Sequences			Length	Strain/Species
genomic	622000	NCBI Gene Model | MGI Sequence Detail	772	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76
• Latest
  J:223383 Arbogast T, et al., Deletion of the App-Runx1 region in mice models human partial monosomy 21. Dis Model Mech. 2015 Jun;8(6):623-34