Gm5446 Pseudogene Detail

Summary

• Symbol
  Gm5446
• Name
  predicted gene 5446

• Feature Type
  pseudogene
• IDs
  MGI:3644854
  NCBI Gene: 432730
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:20179191-20179974 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 7.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644854	pseudogene	Chr13:20177821-20179984 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011478	pseudogene	Chr19:14141234-14142020 (+)
A/J	MGP_AJ_G0010976	pseudogene	Chr13:16888933-16889704 (-)
AKR/J	MGP_AKRJ_G0010928	pseudogene	Chr13:17130475-17131271 (-)
BALB/cJ	MGP_BALBcJ_G0010949	pseudogene	Chr13:16922630-16924919 (-)
C3H/HeJ	MGP_C3HHeJ_G0011345	pseudogene	Chr19:13820710-13821496 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011749	pseudogene	Chr19:14707957-14708743 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012991	pseudogene	ChrX:139864029-139864818 (-)
CAST/EiJ	MGP_CASTEiJ_G0011144	pseudogene	Chr19:13402365-13403152 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011377	pseudogene	Chr19:13295225-13296011 (+)
LP/J	MGP_LPJ_G0011440	pseudogene	Chr19:14144001-14144787 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012783	pseudogene	Chr4:151478296-151479159 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011733	pseudogene	Chr19:13797511-13798297 (+)
PWK/PhJ	MGP_PWKPhJ_G0011003	pseudogene	Chr19:12908575-12909359 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010828	pseudogene	Chr19:13101726-13102511 (+)
WSB/EiJ	MGP_WSBEiJ_G0011173	pseudogene	Chr19:13820893-13821679 (+)

Homology

• Gene Tree
  Gm5446
  

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000050243 (Evidence)
• NCBI Gene
  432730

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000050243	Ensembl Gene Model | MGI Sequence Detail	784	C57BL/6J
transcript	ENSMUST00000091762	Ensembl | MGI Sequence Detail	784	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;