Gm5215 Pseudogene Detail

Summary

• Symbol
  Gm5215
• Name
  predicted gene 5215

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3644834
  NCBI Gene: 383032
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:54175357-54175761 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 21.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644834	pseudogene	Chr15:54175337-54175779 (-)
129S1/SvImJ	ENSMUSG00200031896	pseudogene	Chr15:51161889-51162295 (-)
A/J	ENSMUSG00195006191	pseudogene	Chr15:51193440-51193846 (-)
AKR/J	ENSMUSG00220021332	pseudogene	Chr15:51198547-51198951 (-)
BALB/cJ	ENSMUSG00180009582	pseudogene	Chr15:51140498-51140902 (-)
C3H/HeJ	ENSMUSG00175004821	pseudogene	Chr15:51399091-51399495 (-)
C57BL/6NJ	ENSMUSG00215017863	pseudogene	Chr15:51138473-51138877 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006960	pseudogene	Chr15:51029746-51030151 (-)
CBA/J	ENSMUSG00210007229	pseudogene	Chr15:51221390-51221794 (-)
DBA/2J	ENSMUSG00185027891	pseudogene	Chr15:51202140-51202546 (-)
FVB/NJ	ENSMUSG00205007573	pseudogene	Chr15:51042818-51043224 (-)
JF1/MsJ	ENSUMUG00000033808	pseudogene	Chr15:51016272-51016677 (-)
LP/J	ENSMUSG00230009029	pseudogene	Chr15:54523425-54523831 (-)
NOD/ShiLtJ	ENSMUSG00190018245	pseudogene	Chr15:51188277-51188681 (-)
NZO/HlLtJ	ENSMUSG00225028796	pseudogene	Chr15:54846057-54846461 (-)
PWK/PhJ	ENSLUMG00010028105	pseudogene	Chr15:51270846-51271251 (-)
SPRET/EiJ	ENSMSPG00010024053	pseudogene	Chr15:52353801-52354186 (-)
WSB/EiJ	ENSIUOG00005006528	pseudogene	Chr15:51210671-51211077 (-)

Homology

• Gene Tree
  Gm5215
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  3
• Genomic Mutations
  3 involving Gm5215
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000050978 (Evidence)
• NCBI Gene
  383032

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000050978	Ensembl Gene Model | MGI Sequence Detail	405	C57BL/6J
transcript	ENSMUST00000054380	Ensembl | MGI Sequence Detail	405	Not Applicable
polypeptide	XP_036015561	RefSeq | MGI Sequence Detail	134	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm5215:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134318	Chr15:54175781-54175792 (-)	-26 bp