Gm5576 Pseudogene Detail

Summary

• Symbol
  Gm5576
• Name
  predicted pseudogene 5576

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3644832
  NCBI Gene: 434050
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:78192861-78194096 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 34.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644832	pseudogene	Chr6:78192861-78194152 (+)
129S1/SvImJ	ENSMUSG00200012997	pseudogene	Chr6:75107066-75108301 (+)
A/J	ENSMUSG00195012555	pseudogene	Chr6:74809976-74811211 (+)
AKR/J	ENSMUSG00220002095	pseudogene	Chr6:73843131-73844366 (+)
BALB/cJ	ENSMUSG00180010720	pseudogene	Chr6:75211703-75212938 (+)
C3H/HeJ	ENSMUSG00175012822	pseudogene	Chr6:102224353-102225588 (-)
C57BL/6NJ	ENSMUSG00215016273	pseudogene	Chr6:75195370-75196605 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008513	pseudogene	Chr6:75320917-75322152 (+)
CBA/J	ENSMUSG00210011727	pseudogene	Chr6:75022412-75023647 (+)
CBA/J	ENSMUSG00210005620	pseudogene	Chr6:132728738-132729972 (+)
DBA/2J	ENSMUSG00185001174	pseudogene	Chr6:75575881-75577116 (+)
FVB/NJ	ENSMUSG00205025456	pseudogene	Chr6:74286357-74287592 (+)
JF1/MsJ	ENSUMUG00000024289	pseudogene	Chr6:74685074-74686309 (+)
LP/J	ENSMUSG00230007850	pseudogene	Chr6:76679303-76680538 (+)
NOD/ShiLtJ	ENSMUSG00190001743	pseudogene	Chr6:74651294-74652529 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010007005	pseudogene	Chr6:74099236-74100471 (+)
SPRET/EiJ	ENSMSPG00010038101	pseudogene	Chr6:135156079-135157282 (+)
SPRET/EiJ	ENSMSPG00010000418	pseudogene	Chr6:76034753-76035988 (+)
WSB/EiJ	ENSIUOG00005019126	pseudogene	Chr6:75623719-75624954 (+)

Homology

• Gene Tree
  Gm5576
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm5576
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000108045 (Evidence)
• NCBI Gene
  434050

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108045	Ensembl Gene Model | MGI Sequence Detail	1236	C57BL/6J
transcript	ENSMUST00000075809	Ensembl | MGI Sequence Detail	1236	Not Applicable
polypeptide	XP_036008337	RefSeq | MGI Sequence Detail	411	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48