Gm4940 Pseudogene Detail

Summary

• Symbol
  Gm4940
• Name
  predicted gene 4940

• Feature Type
  pseudogene
• IDs
  MGI:3644793
  NCBI Gene: 239338
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:13452402-13453195 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 6.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644793	pseudogene	Chr15:13452402-13453198 (+)
129S1/SvImJ	ENSMUSG00200004325	pseudogene	Chr15:10438642-10439439 (+)
A/J	ENSMUSG00195011738	pseudogene	Chr15:10343712-10344511 (+)
AKR/J	ENSMUSG00220001739	pseudogene	Chr15:10271674-10272470 (+)
BALB/cJ	ENSMUSG00180009690	pseudogene	Chr15:10369011-10369808 (+)
C3H/HeJ	ENSMUSG00175001979	pseudogene	Chr15:10526135-10526931 (+)
C57BL/6NJ	ENSMUSG00215008065	pseudogene	Chr15:10385404-10386200 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002613	pseudogene	Chr15:10481519-10482330 (+)
CBA/J	ENSMUSG00210004761	pseudogene	Chr15:10511140-10511936 (+)
DBA/2J	ENSMUSG00185003427	pseudogene	Chr15:10468248-10469044 (+)
FVB/NJ	ENSMUSG00205010586	pseudogene	Chr15:10324701-10325499 (+)
JF1/MsJ	ENSUMUG00000013750	pseudogene	Chr15:10567738-10568530 (+)
LP/J	ENSMUSG00230016010	pseudogene	Chr15:13930955-13931752 (+)
NOD/ShiLtJ	ENSMUSG00190002165	pseudogene	Chr15:10409548-10410345 (+)
NZO/HlLtJ	ENSMUSG00225024216	pseudogene	Chr15:14163034-14163831 (+)
PWK/PhJ	ENSLUMG00010015123	pseudogene	Chr15:10630785-10631575 (+)
SPRET/EiJ	ENSMSPG00010001017	pseudogene	Chr15:10671367-10672179 (+)
WSB/EiJ	ENSIUOG00005012109	pseudogene	Chr15:10439395-10440196 (+)

Homology

• Gene Tree
  Gm4940
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000115481 (Evidence)
• NCBI Gene
  239338

Representative Sequences			Length	Strain/Species
genomic	239338	NCBI Gene Model | MGI Sequence Detail	794	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;