Gm6369 Pseudogene Detail

Summary

• Symbol
  Gm6369
• Name
  predicted gene 6369

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3644758
  NCBI Gene: 622921
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:18588039-18588450 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 5.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  200 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644758	pseudogene	Chr3:18548781-18588453 (+)
129S1/SvImJ	ENSMUSG00200018358	pseudogene	Chr3:15340818-15341229 (+)
A/J	ENSMUSG00195016925	pseudogene	Chr3:15408325-15408725 (+)
AKR/J	ENSMUSG00220009297	pseudogene	Chr3:15362336-15362747 (+)
BALB/cJ	ENSMUSG00180001022	pseudogene	Chr3:15427134-15427545 (+)
C3H/HeJ	ENSMUSG00175003247	pseudogene	Chr3:15428459-15428859 (+)
C57BL/6NJ	ENSMUSG00215001356	pseudogene	Chr3:15648501-15648912 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010760	pseudogene	Chr3:13806020-13806430 (+)
CAST/EiJ	ENSTCUG00005024936	pseudogene	Chr3:15369135-15369535 (+)
CBA/J	ENSMUSG00210001860	pseudogene	Chr3:15403801-15404201 (+)
DBA/2J	ENSMUSG00185000677	pseudogene	Chr3:15560248-15560648 (+)
FVB/NJ	ENSMUSG00205002771	pseudogene	Chr3:14934885-14935296 (+)
JF1/MsJ	ENSUMUG00000019639	pseudogene	Chr3:15198266-15198677 (+)
LP/J	ENSMUSG00230004610	pseudogene	Chr3:17533524-17533935 (+)
NOD/ShiLtJ	ENSMUSG00190002489	pseudogene	Chr3:15734468-15734879 (+)
NZO/HlLtJ	ENSMUSG00225007397	pseudogene	Chr3:20121890-20122301 (+)
PWK/PhJ	ENSLUMG00010003328	pseudogene	Chr3:15240902-15241300 (+)
SPRET/EiJ	ENSMSPG00010001912	pseudogene	Chr3:15272346-15272746 (+)
WSB/EiJ	ENSIUOG00005001679	pseudogene	Chr3:15598474-15598874 (+)

Homology

• Gene Tree
  Gm6369
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm6369
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000040217 (Evidence)
• NCBI Gene
  622921

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000040217	Ensembl Gene Model | MGI Sequence Detail	412	C57BL/6J
transcript	ENSMUST00000069626	Ensembl | MGI Sequence Detail	412	Not Applicable
polypeptide	XP_036019392	RefSeq | MGI Sequence Detail	151	C57BL/6J

References

• Summaries
  All 7

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm6369:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28498	Chr3:18587676-18587679 (+)	-361 bp