Gm6142 Pseudogene Detail

Summary

• Symbol
  Gm6142
• Name
  predicted pseudogene 6142
• Synonyms
  Tbca16

• Feature Type
  pseudogene
• IDs
  MGI:3644670
  NCBI Gene: 620313
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:4138220-4138544 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 2.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644670	pseudogene	Chr16:4138045-4138574 (-)
129S1/SvImJ	ENSMUSG00200011693	pseudogene	Chr16:1129613-1129937 (-)
A/J	ENSMUSG00195011870	pseudogene	Chr16:681977-682301 (-)
AKR/J	ENSMUSG00220017504	pseudogene	Chr16:980960-981284 (-)
BALB/cJ	ENSMUSG00180008607	pseudogene	Chr16:930537-930861 (-)
C3H/HeJ	ENSMUSG00175030593	pseudogene	Chr16:1121823-1122147 (-)
C57BL/6NJ	ENSMUSG00215021255	pseudogene	Chr16:803073-803397 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012259	pseudogene	Chr7:124963098-124963423 (+)
CAST/EiJ	ENSTCUG00005031786	pseudogene	Chr16:1011618-1011942 (-)
CBA/J	ENSMUSG00210012054	pseudogene	Chr16:1139150-1139474 (-)
DBA/2J	ENSMUSG00185010252	pseudogene	Chr16:1084339-1084663 (-)
FVB/NJ	ENSMUSG00205013711	pseudogene	Chr16:1005966-1006290 (-)
JF1/MsJ	ENSUMUG00000037104	pseudogene	Chr16:1117113-1117437 (-)
LP/J	ENSMUSG00230012284	pseudogene	Chr16:3625390-3625714 (-)
NOD/ShiLtJ	ENSMUSG00190026074	pseudogene	Chr16:1159756-1160080 (-)
NZO/HlLtJ	ENSMUSG00225023224	pseudogene	Chr16:6867719-6868043 (-)
PWK/PhJ	ENSLUMG00010017766	pseudogene	Chr16:982331-982655 (-)
SPRET/EiJ	ENSMSPG00010017421	pseudogene	Chr16:945998-946322 (-)
WSB/EiJ	ENSIUOG00005016881	pseudogene	Chr16:1124815-1125139 (-)

Homology

• Gene Tree
  Gm6142
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000084304 (Evidence)
• NCBI Gene
  620313

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084304	Ensembl Gene Model | MGI Sequence Detail	325	C57BL/6J
transcript	ENSMUST00000120290	Ensembl | MGI Sequence Detail	325	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:189827 Nolasco S, et al., The expression of tubulin cofactor A (TBCA) is regulated by a noncoding antisense Tbca RNA during testis maturation. PLoS One. 2012;7(8):e42536

TSS for Gm6142:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139764	Chr16:4138574-4138575 (-)	-31 bp
Tssr139763	Chr16:4138516-4138527 (-)	22 bp