Gm5260 Pseudogene Detail

Summary

• Symbol
  Gm5260
• Name
  predicted gene 5260

• Feature Type
  pseudogene
• IDs
  MGI:3644614
  NCBI Gene: 383546
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:104440726-104441491 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 49.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644614	pseudogene	Chr1:104440726-104441793 (+)
129S1/SvImJ	ENSMUSG00200000535	pseudogene	Chr1:101721855-101722922 (+)
A/J	ENSMUSG00195000535	pseudogene	Chr1:101187922-101188989 (+)
AKR/J	ENSMUSG00220000349	pseudogene	Chr1:101251199-101252266 (+)
BALB/cJ	ENSMUSG00180000509	pseudogene	Chr1:101475292-101476359 (+)
C3H/HeJ	ENSMUSG00175000606	pseudogene	Chr1:101381426-101382493 (+)
C57BL/6NJ	ENSMUSG00215008155	pseudogene	Chr1:101427605-101428672 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000175	pseudogene	Chr1:100775146-100776213 (+)
CBA/J	ENSMUSG00210000228	pseudogene	Chr1:101275385-101276452 (+)
DBA/2J	ENSMUSG00185008892	pseudogene	Chr1:105748177-105749244 (+)
FVB/NJ	ENSMUSG00205000995	pseudogene	Chr1:100574940-100576007 (+)
JF1/MsJ	ENSUMUG00000000250	pseudogene	Chr1:104373231-104374298 (+)
LP/J	ENSMUSG00230000285	pseudogene	Chr1:105011110-105012177 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225000444	pseudogene	Chr1:108880144-108881211 (+)
PWK/PhJ	ENSLUMG00010006435	pseudogene	Chr1:100776672-100777739 (+)
SPRET/EiJ	ENSMSPG00010000607	pseudogene	Chr1:103035933-103037005 (+)
WSB/EiJ	ENSIUOG00005000321	pseudogene	Chr1:101073253-101074320 (+)

Homology

• Gene Tree
  Gm5260
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm5260
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000099464 (Evidence)
• NCBI Gene
  383546

Representative Sequences			Length	Strain/Species
genomic	383546	NCBI Gene Model | MGI Sequence Detail	766	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45