Gm5407 Pseudogene Detail

Summary

• Symbol
  Gm5407
• Name
  predicted gene 5407

• Feature Type
  pseudogene
• IDs
  MGI:3644612
  NCBI Gene: 386061
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:49117014-49118261 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 30.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  303 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644612	pseudogene	Chr16:49116760-49119025 (-)
129S1/SvImJ	ENSMUSG00200021580	pseudogene	Chr16:45994445-45995627 (-)
A/J	ENSMUSG00195003489	pseudogene	Chr16:45604377-45605624 (-)
AKR/J	ENSMUSG00220022755	pseudogene	Chr16:45957730-45958977 (-)
BALB/cJ	ENSMUSG00180029595	pseudogene	Chr16:45809073-45810320 (-)
C3H/HeJ	ENSMUSG00175026421	pseudogene	Chr16:46077788-46078971 (-)
C57BL/6NJ	ENSMUSG00215008526	pseudogene	Chr16:45913471-45914718 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019834	protein coding gene	Chr15:57453102-57453960 (-)
CAST/EiJ	ENSTCUG00005012820	pseudogene	Chr16:46227850-46229080 (-)
CBA/J	ENSMUSG00210016843	pseudogene	Chr16:46107657-46108840 (-)
DBA/2J	ENSMUSG00185010958	pseudogene	Chr16:45988562-45989809 (-)
FVB/NJ	ENSMUSG00205013437	pseudogene	Chr16:45894700-45895947 (-)
JF1/MsJ	ENSUMUG00000033083	pseudogene	Chr16:46198300-46199483 (-)
LP/J	ENSMUSG00230028940	pseudogene	Chr16:48554889-48556136 (-)
NOD/ShiLtJ	ENSMUSG00190019729	pseudogene	Chr16:46011569-46012816 (-)
NZO/HlLtJ	ENSMUSG00225026032	pseudogene	Chr16:51646758-51648005 (-)
PWK/PhJ	ENSLUMG00010028128	pseudogene	Chr16:46042606-46043789 (-)
SPRET/EiJ	ENSMSPG00010007834	pseudogene	Chr16:46294498-46295726 (-)
WSB/EiJ	ENSIUOG00005013453	pseudogene	Chr16:46193522-46194704 (-)

Homology

• Gene Tree
  Gm5407
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000058176 (Evidence)
• NCBI Gene
  386061

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000058176	Ensembl Gene Model | MGI Sequence Detail	1248	C57BL/6J
transcript	ENSMUST00000080694	Ensembl | MGI Sequence Detail	1248	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 2

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;