Gm6420 Gene Detail

Summary

• Symbol
  Gm6420
• Name
  predicted gene 6420

• Feature Type
  protein coding gene
• IDs
  MGI:3644588
  NCBI Gene: 623356
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:23294766-23295488 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 9.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644588	protein coding gene	Chr1:23294766-23295488 (-)
129S1/SvImJ	ENSMUSG00200001003	unclassified gene	Chr1:20721048-20721770 (-)
A/J	ENSMUSG00195000151	unclassified gene	Chr1:20478741-20479463 (-)
AKR/J	ENSMUSG00220000766	unclassified gene	Chr1:20523543-20524265 (-)
BALB/cJ	ENSMUSG00180001221	unclassified gene	Chr1:20566053-20566775 (-)
C3H/HeJ	ENSMUSG00175000785	unclassified gene	Chr1:20469815-20470537 (-)
C57BL/6NJ	ENSMUSG00215001080	unclassified gene	Chr1:20553389-20554111 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000209	unclassified gene	Chr1:18780329-18781053 (-)
CAST/EiJ	ENSTCUG00005000531	unclassified gene	Chr1:20785335-20786057 (-)
CBA/J	ENSMUSG00210010792	unclassified gene	Chr1:20346170-20346892 (-)
DBA/2J	ENSMUSG00185016602	unclassified gene	Chr1:21390430-21391152 (-)
FVB/NJ	ENSMUSG00205007145	unclassified gene	Chr1:20473581-20474303 (-)
JF1/MsJ	ENSUMUG00000000345	unclassified gene	Chr1:20674446-20675169 (-)
LP/J	ENSMUSG00230000634	unclassified gene	Chr1:21399792-21400514 (-)
NOD/ShiLtJ	ENSMUSG00190000078	unclassified gene	Chr1:20476752-20477474 (-)
NZO/HlLtJ	ENSMUSG00225000876	unclassified gene	Chr1:24696730-24697452 (-)
PWK/PhJ	ENSLUMG00010000168	unclassified gene	Chr1:20257197-20257913 (-)
SPRET/EiJ	ENSMSPG00010000828	unclassified gene	Chr1:21225932-21226654 (-)
WSB/EiJ	ENSIUOG00005002002	unclassified gene	Chr1:20457379-20458101 (-)

Homology

• Gene Tree
  Gm6420
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm6420
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000102766 (Evidence)
• NCBI Gene
  623356

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102766	Ensembl Gene Model | MGI Sequence Detail	723	C57BL/6J
transcript	AK131727	GenBank | ENA | DDBJ | MGI Sequence Detail	724	C57BL/6J
polypeptide	Q3V2L3	UniProt | EBI | MGI Sequence Detail	139	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:224530 Dietrich JE, et al., Venus trap in the mouse embryo reveals distinct molecular dynamics underlying specification of first embryonic lineages. EMBO Rep. 2015 Aug;16(8):1005-21